Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2631 ATGACTGATCCTTACCCCATCAACAATAATGGCTCCTTTGGCGATTTATACCCTCTTCACCATTACTTTTCTTCTTCTTCTTCTTCTTCTTCCAATTCTTACTCTCCTTATTATGATCATCCCTTCTCTCTTTCTTACTCCAATGATAATAATAACAATAATAATACCCTAATGACCTCTCCTCATTATCCTTCTTCCTCTCCTCAAGTCCTTCTTCCCCTTCTAAGCTTAAGCCCTGCAAGAGTAGCACAAGATCATGATAATGAAAATCACTCATTTTCCAAAGACTTGATCAAGAACTTTTGCAACCCAGCTGAAGATGATGTTGACAATGATAATGATGATGATGATGATCAAAGTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTTCTAATTCTGATTTGATTTTGAGACTTTCTTCAACTGAGATCTCAGATCAAGATGATCATCATCAATTAGAAGATCAAGTTCCTAATTCTAATTATTCTTCTTCTAATTCCAATATTATTACTACTGCTGCTACTACTACTACTGGGCTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGCTTAGGCTGCCATGTTATTGCTGTGCAGTTGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTACAAAAGAAAACATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAAAATTGCGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCATAAGAGATCTCTTAAAGATCATATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGAATTGATCACTCTTTTGAAGAAGATGATGAGCCAGCTTCTGAGATTGAAACATGA 1089 38.2 MTDPYPINNNGSFGDLYPLHHYFSSSSSSSSNSYSPYYDHPFSLSYSNDNNNNNNTLMTSPHYPSSSPQVLLPLLSLSPARVAQDHDNENHSFSKDLIKNFCNPAEDDVDNDNDDDDDQSVTVALHLGLPTPSSSSSNSDLILRLSSTEISDQDDHHQLEDQVPNSNYSSSNSNIITTAATTTTGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAVGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFEEDDEPASEIET 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39577417 39580270 + CrPI670011_02g026310.1 Cre02g2631 491912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2631 362 SMART c2h2final6 290 310 IPR013087 -
Cre02g2631 362 SMART c2h2final6 316 339 IPR013087 -
Cre02g2631 362 SMART c2h2final6 253 285 IPR013087 -
Cre02g2631 362 SMART c2h2final6 206 228 IPR013087 -
Cre02g2631 362 Gene3D Classic Zinc Finger 250 338 - -
Cre02g2631 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 233 IPR013087 -
Cre02g2631 362 FunFam Zinc finger protein WIP2 259 341 - -
Cre02g2631 362 SUPERFAMILY beta-beta-alpha zinc fingers 271 310 IPR036236 -
Cre02g2631 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 317 IPR013087 -
Cre02g2631 362 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 289 313 - -
Cre02g2631 362 ProSitePatterns Zinc finger C2H2 type domain signature. 208 228 IPR013087 -
Cre02g2631 362 PANTHER ZINC FINGER PROTEIN WIP2 42 361 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cre02g2631 362 Pfam Zinc finger, C2H2 type 206 225 IPR013087 -
Cre02g2631 362 Gene3D Classic Zinc Finger 205 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1132 Cre-Chr1:21429134 Cre02g2631 Cre-Chr2:39577417 2.30E-83 transposed
Cre03g1283 Cre-Chr3:20164915 Cre02g2631 Cre-Chr2:39577417 1.20E-85 transposed
Cre04g0143 Cre-Chr4:3703774 Cre02g2631 Cre-Chr2:39577417 9.50E-98 transposed
Cre10g1839 Cre-Chr10:32963284 Cre02g2631 Cre-Chr2:39577417 1.80E-94 transposed
Cre02g2631 Cre-Chr2:39577417 Cre09g0400 Cre-Chr9:3942788 2.20E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53264 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2631 - - - 0.0