Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g2634 | ATGGGATCCATGAATTCAAACAATTGGCTTTCCTTTCCACTTTCACCTACTAATCCTTCTTTACCACCACATCTTCAAACCACAACTCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGACATCCCATTTCAAACCCACCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGCAATGATACAGATTATTTGTTTCCAATCACAAGATTAGTTTCTGTTCATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACCCACTGCTCCTCCTCCTAATATAAATCTTGACTCTTCTACTAACTTTGACCTTCAAGATAATTCCAATTGTTTGCAATCTTTAACCCTTTCAATGGGCAGTGGCAAACCCTCTACTTGTGAACAAACAACCTCCACCCCTGACAATAGTACCTCCAATAATAATAATAACAATAATAATACCACTCTTGATGTCACCCCTCGAAGAACTTTGGACACTTTTGGCCAAAGAACTTCCATTTATCGCGGTGTCACCAGGCATAGATGGACAGGAAGGTATGAAGCACATTTGTGGGATAATAGTTGCAGAAGGGAAGGGCAGTCCAGGAAGGGTCGGCAAGGTGGGTATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCAATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACAGAAGAGGAAGCAGCAGAAGCATATGACATAGCGGCGATAAAATTTAGAGGGCTAAATGCAGTGACAAATTTCGACATGAGTCGTTATGACGTGAAAAGCATATTAGAGAGCAACACACTCCCAATCGGTGGCGGTGCAGCGAAGCGACTAAAAGAGGCTCAAGCCATGGAATCGTCTCGAAAACGAGACGAGATGATTGCCCTAGGTTCCTCTTCCTCCTCCTCCTCTTGCTTCCAATATGGAACCTCTTCCTCCTCAACTAATAATTCCTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATGGACCATCACCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGATATTTCTCATTACACCCACCATCATTCCTCCTCCTTCCACCACCCTTCTTCTTCTTACATCCACCACTCATCTGATCATTCCGCTTATCCTAACAACAACAGCCATCCATTCTACGGTGGAGGATATCTTCATAATCATCCCGCTTTGCTTCACGGGATGATCAATATGGGCGGTGGAGGTGGCGGAGGCGGCGGAGGAGCTTCTAGTTTGGACACTAATAACAATACTAATACCTTGAATCATTTTGAGAACAATACTAGTGGAGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACCTCGAACAGCAGCGGCGCCGCAGCGGAGGAATATGCGCTCGTTAAGGTTGACTATGACATGCCTAATTCTGGCGGGTACGGTGGTTGGACGGGGGATTCGGTTCAAGGTTCTAACGCTGGGGTTTTCTCTATGTGGAACGATTGA | 1821 | 43.16 | MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHSHHFSLGNLENDHNMDIPFQTHHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVSVHQQQQQQQQQQQQQQQPTAPPPNINLDSSTNFDLQDNSNCLQSLTLSMGSGKPSTCEQTTSTPDNSTSNNNNNNNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAMESSRKRDEMIALGSSSSSSSCFQYGTSSSSTNNSSHYPNLLQQPNLNMDHHLQTQPLLSLQNHHDISHYTHHHSSSFHHPSSSYIHHSSDHSAYPNNNSHPFYGGGYLHNHPALLHGMINMGGGGGGGGGGASSLDTNNNTNTLNHFENNTSGGGYLGNAFGMGSTSNSSGAAAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND | 606 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 39612798 | 39616145 | + | CrPI670011_02g026340.1 | Cre02g2634 | 491915 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g2634 | 606 | PRINTS | Ethylene responsive element binding protein signature | 206 | 217 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | PRINTS | Ethylene responsive element binding protein signature | 344 | 364 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | SMART | rav1_2 | 304 | 368 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | SMART | rav1_2 | 205 | 274 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | SUPERFAMILY | DNA-binding domain | 204 | 270 | IPR016177 | GO:0003677(InterPro) | |
Cre02g2634 | 606 | CDD | AP2 | 303 | 364 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 204 | 270 | - | - | |
Cre02g2634 | 606 | Pfam | AP2 domain | 305 | 354 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | MobiDBLite | consensus disorder prediction | 110 | 191 | - | - | |
Cre02g2634 | 606 | FunFam | AP2-like ethylene-responsive transcription factor | 303 | 364 | - | - | |
Cre02g2634 | 606 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 131 | 462 | - | - | |
Cre02g2634 | 606 | SUPERFAMILY | DNA-binding domain | 303 | 364 | IPR016177 | GO:0003677(InterPro) | |
Cre02g2634 | 606 | Gene3D | AP2/ERF domain | 304 | 364 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | Gene3D | AP2/ERF domain | 205 | 270 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | CDD | AP2 | 204 | 270 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | ProSiteProfiles | AP2/ERF domain profile. | 205 | 268 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | MobiDBLite | consensus disorder prediction | 463 | 485 | - | - | |
Cre02g2634 | 606 | MobiDBLite | consensus disorder prediction | 408 | 428 | - | - | |
Cre02g2634 | 606 | ProSiteProfiles | AP2/ERF domain profile. | 304 | 362 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2634 | 606 | MobiDBLite | consensus disorder prediction | 469 | 485 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2634 | Cre-Chr2:39612798 | Cre11g1355 | Cre-Chr11:15777955 | 1.60E-103 | dispersed | |
Cre02g2634 | Cre-Chr2:39612798 | Cre04g1401 | Cre-Chr4:32806208 | 9.90E-93 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53265 | PF00847 | AP2 | 2.90E-09 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g2634 | K09285 | - | csv:101207097 | 999.964 |