Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2634 ATGGGATCCATGAATTCAAACAATTGGCTTTCCTTTCCACTTTCACCTACTAATCCTTCTTTACCACCACATCTTCAAACCACAACTCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGACATCCCATTTCAAACCCACCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGCAATGATACAGATTATTTGTTTCCAATCACAAGATTAGTTTCTGTTCATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACCCACTGCTCCTCCTCCTAATATAAATCTTGACTCTTCTACTAACTTTGACCTTCAAGATAATTCCAATTGTTTGCAATCTTTAACCCTTTCAATGGGCAGTGGCAAACCCTCTACTTGTGAACAAACAACCTCCACCCCTGACAATAGTACCTCCAATAATAATAATAACAATAATAATACCACTCTTGATGTCACCCCTCGAAGAACTTTGGACACTTTTGGCCAAAGAACTTCCATTTATCGCGGTGTCACCAGGCATAGATGGACAGGAAGGTATGAAGCACATTTGTGGGATAATAGTTGCAGAAGGGAAGGGCAGTCCAGGAAGGGTCGGCAAGGTGGGTATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCAATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACAGAAGAGGAAGCAGCAGAAGCATATGACATAGCGGCGATAAAATTTAGAGGGCTAAATGCAGTGACAAATTTCGACATGAGTCGTTATGACGTGAAAAGCATATTAGAGAGCAACACACTCCCAATCGGTGGCGGTGCAGCGAAGCGACTAAAAGAGGCTCAAGCCATGGAATCGTCTCGAAAACGAGACGAGATGATTGCCCTAGGTTCCTCTTCCTCCTCCTCCTCTTGCTTCCAATATGGAACCTCTTCCTCCTCAACTAATAATTCCTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATGGACCATCACCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGATATTTCTCATTACACCCACCATCATTCCTCCTCCTTCCACCACCCTTCTTCTTCTTACATCCACCACTCATCTGATCATTCCGCTTATCCTAACAACAACAGCCATCCATTCTACGGTGGAGGATATCTTCATAATCATCCCGCTTTGCTTCACGGGATGATCAATATGGGCGGTGGAGGTGGCGGAGGCGGCGGAGGAGCTTCTAGTTTGGACACTAATAACAATACTAATACCTTGAATCATTTTGAGAACAATACTAGTGGAGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACCTCGAACAGCAGCGGCGCCGCAGCGGAGGAATATGCGCTCGTTAAGGTTGACTATGACATGCCTAATTCTGGCGGGTACGGTGGTTGGACGGGGGATTCGGTTCAAGGTTCTAACGCTGGGGTTTTCTCTATGTGGAACGATTGA 1821 43.16 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHSHHFSLGNLENDHNMDIPFQTHHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVSVHQQQQQQQQQQQQQQQPTAPPPNINLDSSTNFDLQDNSNCLQSLTLSMGSGKPSTCEQTTSTPDNSTSNNNNNNNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAMESSRKRDEMIALGSSSSSSSCFQYGTSSSSTNNSSHYPNLLQQPNLNMDHHLQTQPLLSLQNHHDISHYTHHHSSSFHHPSSSYIHHSSDHSAYPNNNSHPFYGGGYLHNHPALLHGMINMGGGGGGGGGGASSLDTNNNTNTLNHFENNTSGGGYLGNAFGMGSTSNSSGAAAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39612798 39616145 + CrPI670011_02g026340.1 Cre02g2634 491915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2634 606 PRINTS Ethylene responsive element binding protein signature 206 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 PRINTS Ethylene responsive element binding protein signature 344 364 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 SMART rav1_2 304 368 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 SMART rav1_2 205 274 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 SUPERFAMILY DNA-binding domain 204 270 IPR016177 GO:0003677(InterPro)
Cre02g2634 606 CDD AP2 303 364 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 FunFam AP2-like ethylene-responsive transcription factor ANT 204 270 - -
Cre02g2634 606 Pfam AP2 domain 305 354 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 MobiDBLite consensus disorder prediction 110 191 - -
Cre02g2634 606 FunFam AP2-like ethylene-responsive transcription factor 303 364 - -
Cre02g2634 606 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 131 462 - -
Cre02g2634 606 SUPERFAMILY DNA-binding domain 303 364 IPR016177 GO:0003677(InterPro)
Cre02g2634 606 Gene3D AP2/ERF domain 304 364 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 Gene3D AP2/ERF domain 205 270 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 CDD AP2 204 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 ProSiteProfiles AP2/ERF domain profile. 205 268 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 MobiDBLite consensus disorder prediction 463 485 - -
Cre02g2634 606 MobiDBLite consensus disorder prediction 408 428 - -
Cre02g2634 606 ProSiteProfiles AP2/ERF domain profile. 304 362 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2634 606 MobiDBLite consensus disorder prediction 469 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2634 Cre-Chr2:39612798 Cre11g1355 Cre-Chr11:15777955 1.60E-103 dispersed
Cre02g2634 Cre-Chr2:39612798 Cre04g1401 Cre-Chr4:32806208 9.90E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53265 PF00847 AP2 2.90E-09 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2634 K09285 - csv:101207097 999.964