Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2671 ATGTCGTCCTTCAAATTTGCAGCTTTAGCAGCCTTGTTGTTGTGTATGATGTTGAGGGGATGTTGGGCCCAACTCAGCCCTACCTTCTACGACCAATCTTGCCCTAATCTAACCGCCATAGTCAGAGATGCAATAAGCCAGGCATTCCAGGGTGATGTTCGAGCCGGAGCCAAGCTCATTCGCTTTCACTTCCACGATTGCTTCGTCAATGGTTGTGATGGATCGGTTTTACTAGAGAATCAAGATGGTGTGGAAAGCGAGTTAGATGCTCCAGGGAACCAAGGAATACAAGGCTTTGACATTGTCGACAACATAAAAGCTGCAGTTGAAGCTGCCTGCCCAAACACCGTGTCTTGTGCTGACATCTTAGCCCTTTCATCTCGTGAATCTGTCATCTTGACGGGAGGGCCAAGTTGGGTAGTTCAATTGGGGAGAAGAGATAGCAGAAACGCAAATAGAACTGGAGCTGAAAACAACCTCCCAAGCCCTTTCGAAACACTCGATCAACTTCGGGTAAAATTTAATGCAGTTGGTCTCGATTCTACCGATCTTGTGGCTTTATCCGGAGCGCATACGTTCGGAAGGTCAAGATGCGTATTCTTCAGCGGGCGGCTAAGCAATTTCAGCGGTACCGGAAGCCCAGACCCGACTCTTGACCCGACGTTACGGGATGCACTGGTCATCGCTTGTCCGACCGGCGACGGAAACAACCGCATCGCACTTGACGTGGCGACGCCGGACAGCTTCGACAATGCATACTACACCAATCTGGTCAACAACCGTGGGCTTCTCCAATCGGATCAAGAGCTGTTCTCAACCGAAGGGGCGGAAACCATCGCCACCGTGAACCGTTTTGCCGGCAACCAATCTGATTTCTTTGGTCAGTTCGGTCAGTCTATGATAAACATGGGGAACCTCCAACCATTAGTTGGGCCCAATGGAGAAATCAGGTCCAATTGTAGGCGGGTTAATCCTTTGAATATTACCACTGGTGCTGCTACTGCTGTTATGTAA 1014 49.7 MSSFKFAALAALLLCMMLRGCWAQLSPTFYDQSCPNLTAIVRDAISQAFQGDVRAGAKLIRFHFHDCFVNGCDGSVLLENQDGVESELDAPGNQGIQGFDIVDNIKAAVEAACPNTVSCADILALSSRESVILTGGPSWVVQLGRRDSRNANRTGAENNLPSPFETLDQLRVKFNAVGLDSTDLVALSGAHTFGRSRCVFFSGRLSNFSGTGSPDPTLDPTLRDALVIACPTGDGNNRIALDVATPDSFDNAYYTNLVNNRGLLQSDQELFSTEGAETIATVNRFAGNQSDFFGQFGQSMINMGNLQPLVGPNGEIRSNCRRVNPLNITTGAATAVM 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39950273 39951685 + CrPI670011_02g026710.1 Cre02g2671 491952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2671 337 FunFam Peroxidase 161 303 - -
Cre02g2671 337 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 Gene3D - 29 324 - -
Cre02g2671 337 Gene3D Peroxidase, domain 2 161 303 - -
Cre02g2671 337 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre02g2671 337 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PANTHER PEROXIDASE 72-RELATED 14 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cre02g2671 337 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2671 337 FunFam Peroxidase 28 173 - -
Cre02g2671 337 Pfam Peroxidase 41 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2671 Cre-Chr2:39950273 Cre09g2044 Cre-Chr9:39542773 2.70E-116 dispersed
Cre02g2670 Cre-Chr2:39928309 Cre02g2671 Cre-Chr2:39950273 8.80E-83 tandem
Cre02g2671 Cre-Chr2:39950273 Cre02g2672 Cre-Chr2:39956443 4.00E-120 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2671 K00430 - csv:101217743 590.112