Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2675 ATGGGTTCTTTCAGTTTCTTGCTTTTGTTTGTGGGTGTTTTGTTTGGAAGGTCTTATGCCCAACTCACCGAGAACTTCTACGACCAAACTTGCCCTCGTCTCCCTAACATTGTCCGCCGTGAGGTCAAGAGAGCTATCGAAACCGACATCCGTGCCGGGGCGAAACTCATTCGCTTCCATTTCCACGATTGCTTCGTCCAAGGTTGCGACGGCTCTGTTTTGCTAGAGGATGCTCCTGGCATAGACAGTGAGCTGAACGGACTTGGAAATTTAGGAATCCAAGGATTGGAGATTGTCGATGCTATCAAAGCCGCTGTCGAGAGGGAATGTCCCGGCGTAGTCTCATGCGCCGACATCCTAGCTCAAGCCTCTAAAGACTCTGTGGACGTGCAAGGAGGGCCCAGTTGGAGAGTTTTATACGGAAGAAGAGATAGCAGAACAGCCAATAGATCAGGGGCTGATGAACTCCCAAGTCCCTTCGAAAATCTTGACCAACTCAAAAGAAAGTTCGAAGTCCTTGGGTTGAATTCCACTGATCTTGTTGCTCTATCAGGAGCACATACGTTTGGTCGGTCAAGATGCATGTTCTTCAGTGACCGTTTGTCCAACTTTAGCGGGAGTGGGCAACCAGATCCGACCCTGGATCCAACCTACAGGCAAGAACTGGAAAGAGCTTGTACAAGTCCAGAAACACGAGTGAATTTGGATCCAACAACACCGGACACATTTGACAAAAATTACTACACCAATCTTCAAGCCAATCGAGGTCTTCTTCAGAGCGACCAAGTTCTGTTCTCTACTGGAGGGGCCGACACAATTGCCATTGTCAACCTTCTTGGATCGCGAGAAGGCACCTTCTTTAGACAATTTCGGCTCTCCATGATTAAGATGGGAAATATTAGACCCTTAACCGGAACCCAAGGGGAAATCAGAAGAAACTGCAGGAGGGTCAATGACTTGGGAGGTGAAGCAGGACATGATGTTATGTAA 990 48.18 MGSFSFLLLFVGVLFGRSYAQLTENFYDQTCPRLPNIVRREVKRAIETDIRAGAKLIRFHFHDCFVQGCDGSVLLEDAPGIDSELNGLGNLGIQGLEIVDAIKAAVERECPGVVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRTANRSGADELPSPFENLDQLKRKFEVLGLNSTDLVALSGAHTFGRSRCMFFSDRLSNFSGSGQPDPTLDPTYRQELERACTSPETRVNLDPTTPDTFDKNYYTNLQANRGLLQSDQVLFSTGGADTIAIVNLLGSREGTFFRQFRLSMIKMGNIRPLTGTQGEIRRNCRRVNDLGGEAGHDVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39976162 39977336 + CrPI670011_02g026750.1 Cre02g2675 491956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2675 329 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 ProSiteProfiles Plant heme peroxidase family profile. 21 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 FunFam Peroxidase 25 169 - -
Cre02g2675 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
Cre02g2675 329 FunFam Peroxidase 157 297 - -
Cre02g2675 329 Gene3D - 26 318 - -
Cre02g2675 329 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 SUPERFAMILY Heme-dependent peroxidases 21 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 Gene3D Peroxidase, domain 2 157 297 - -
Cre02g2675 329 CDD secretory_peroxidase 21 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre02g2675 329 PANTHER PEROXIDASE 72-RELATED 10 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2675 329 Pfam Peroxidase 38 276 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2675 Cre-Chr2:39976162 Cre02g2677 Cre-Chr2:39997194 8.20E-142 dispersed
Cre02g2674 Cre-Chr2:39968611 Cre02g2675 Cre-Chr2:39976162 1.70E-107 tandem
Cre02g2675 Cre-Chr2:39976162 Cre02g2676 Cre-Chr2:39983214 5.40E-178 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2675 K00430 - csv:101212230 491.5