Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2678 ATGGCTTCCTTCTTCAAAGTTGTTTCTTTCCTTTTGTTTGTGGGGTTGATGGTTGAAGCTTCTAAAGCTCAGCTCTGCCCCACGTTTTACGACGACTCATGCCCCGACGTATCCAACATTGTGCGCAGTGTAGTGCAGCAAGCTTTGGAAACTGACGACCGTGCTGGTGCCAGACTCATTCGCCTTCATTTTCACGACTGCTTTGTTGATGGATGCGATGGGTCAGTTTTACTAGTGAACCAAACCGGCGTAGTGAGTGAGCTTGGCGCTCCTGGAAATGCCAATATTACAGGATTTAACATCGTCGATGACATTAAAGCCGCACTCGAGGAAGCTTGTCCTGGTGTTGTTTCTTGTGCTGACATTTTAGCCCTAGCTTCTGTGGAAGCAGTTTCCTTGGCAGGAGGACCGTGTTGGGAGGTTCAATTGGGAAGAAGGGACAGCAGAACGGCTAACTTACAAGGCGCAATCGATGGGCTTCCAAGTCCTTTCGAAAATGTTACAGAACTTAAACGCAAGTTCGGTAGAGTGGGTCTTGATTCTACCGATCTTGTTGCCTTATCTGGGGCCCACACATTCGGGAGATCAAGATGCCGATTTTTCGACGGACGTTTGAACGTTTCAAATCCAGACGCCACGCTGGACGCCACGTACGCACAGCAGCTCCGTGAGGCTTGCAGTGGGAGCAGAGACACGTTTGTAAACCTGGACCCCACCACTCCCGACGACTTCGACAACAACTACTACACAAACCTTCAGTCCAACTCCGGTCTTCTCACCAGCGACCAAGTCCTCTTCTCCACTCCCGGCGCCGACACCGTGGACACCGTCAACATCTTCGCCGGCAGCCAGCAGCAGTTCTTCGACAGCTTCGGCCAGTCCATGATCAACATGGGAAATATCAGCCCTTTAACCGGTGACCAGGGAGAAATTAGGTCCAATTGCCGAAGGCTCAACTGA 960 51.15 MASFFKVVSFLLFVGLMVEASKAQLCPTFYDDSCPDVSNIVRSVVQQALETDDRAGARLIRLHFHDCFVDGCDGSVLLVNQTGVVSELGAPGNANITGFNIVDDIKAALEEACPGVVSCADILALASVEAVSLAGGPCWEVQLGRRDSRTANLQGAIDGLPSPFENVTELKRKFGRVGLDSTDLVALSGAHTFGRSRCRFFDGRLNVSNPDATLDATYAQQLREACSGSRDTFVNLDPTTPDDFDNNYYTNLQSNSGLLTSDQVLFSTPGADTVDTVNIFAGSQQQFFDSFGQSMINMGNISPLTGDQGEIRSNCRRLN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40006264 40008366 + CrPI670011_02g026780.1 Cre02g2678 491959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2678 319 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cre02g2678 319 ProSiteProfiles Plant heme peroxidase family profile. 24 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 Gene3D - 29 319 - -
Cre02g2678 319 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 SUPERFAMILY Heme-dependent peroxidases 24 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 CDD secretory_peroxidase 24 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre02g2678 319 Gene3D Peroxidase, domain 2 161 298 - -
Cre02g2678 319 FunFam Peroxidase 161 298 - -
Cre02g2678 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cre02g2678 319 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 PANTHER PEROXIDASE 72-RELATED 14 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2678 319 FunFam Peroxidase 28 177 - -
Cre02g2678 319 Pfam Peroxidase 41 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2676 Cre-Chr2:39983214 Cre02g2678 Cre-Chr2:40006264 2.50E-106 dispersed
Cre02g2678 Cre-Chr2:40006264 Cre09g2044 Cre-Chr9:39542773 6.60E-104 dispersed
Cre02g2677 Cre-Chr2:39997194 Cre02g2678 Cre-Chr2:40006264 3.00E-107 tandem
Cre02g2678 Cre-Chr2:40006264 Cre02g2679 Cre-Chr2:40015964 5.70E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2678 K00430 - csv:101212717 523.472