Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2680 ATGATCGACTCTCTTCTTTTGGAGTCTTATGATGCAAGTGGTGGTCCGTTGGCTGGCCCGACACACGGGCCATTGCTTTGCTTCACTTCACCACCCACCCCTTTCTTCTTTCTCTTTCCATTTCCTTTTGGGGCCAAACAATTCTATCAAGGGTTGTTCAGCGGCGTAAACCTCATTTCCTGCTGTTTTCTGCTCGATCACTCTCTAACCCTTCAATTTTCCCATCTGGATGATTATATGAGTACCATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACGGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAGCAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTCGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGAGTCTTCACCGGCTTAAACCCTAAACCCTGTGGAGTTCGCGTAGAGGGAAGGAAGAAAACCGCCGAACAAATGCTGATTACTCGAAAGCTTTCTGCTTCGAACCTCAAATCCTTTCTTTCTCTGCGTTTCGTTTCCCCTTCTCTGACTTCGCACTTGTTTTCTTCACCTTTCTGCTTAAACCCACCAATCCTTTGCCCACTTCCTCCCACTCTTTCGCCTTCTTTCTCTTCGAAACCCACACCTCCAGAAGCTTCCAGCCTCACCCGTGATGGCAACTACGACGAAGCCACTTCCCGATTCTCCCTCGTCTGCCCTGGCTGTGGAGTTCACATGCAAGACACCAATCCCAAACATCCTGGCTTCTTCGTCAAACCCTCGAGAAAAGATTCCAATTATCGCTTACTTACCCATCTCGTCCCCGTCGATGATGAATCTGAATGCTCCGAATTTCTCAAGAGAGGCCTCGTAATCGAGCCAGATAATCAGAAAACTGAAGAGAATGTGACCGAGAAACCCCACAAGCCGACCGTGTGTTCGCGGTGCCACTCATTGAGGCATTATGGGAAGGTAAAGGATCCTTCAGTAGAGAATTTACTGCCGGATTTTGATTTCGATCATACCATCGGTAGGAGACTGGCGTCGACTTCGGGAACCCGATCTGTTGTTCTGATCGTCGTTGATGCTGCAGATTTTGATGGGTCATTCCCAAAGAAGGTAGCGAACTTGGTCTCGGCGACTATTGAGGATAATTCAGCTGCCTGGAAACAGGGGAAATCAGGGAATGTGCCTAGAGTGGTGCTTGTAGTGACAAAAATTGATCTGCTGCCTAGCTCTTTATCACCGACGAGATTTGAGCATTGGGTGAGGCAGAGAGCGAGGGAGGGAGGGATTAACAAGATAACGAGTTTGCATATGGTGAGTGCGGTTAGAGATTGGGGGCTGAAAAATTTGGTGGAGGATGTAATTGAATTGGTTGGGGCGAGAGGGAATGTGTGGGCAATTGGAGCACAAAATGCTGGGAAAAGCACGCTGATTAATTCAATAGGAAAGCATGTTGGTGGGAAGATTACGCAGTTGACTGAAGCACCAGTTCCTGGGACAACGTTGGGGATAATCAGAGTAGAGGGAATTTTTCCGGGTCAAGCCAAATTGTTTGATACTCCTGGGCTTCTCAATCCCCATCAGATTACTACGAGATTGACAAGGGAAGAGCAGAAACTTGTTCACATCAGCAAGGAATTGAAGCCCAGGACTTACAGGATTAAGGTTGGTCACACAATTCATGTTGCTGGCCTCATGAGGCTAGATGTGGAAGAAACAACTGTGGATACAATTTATGTTACGGTGTGGGCATCTCCTTATCTTCCATTACACATGGGGAAAACAGAAAATGCAACCAAAATACAGGAGGACCATTTTGGGAATCAATTGCAGCCACCTATAGGCAAAGATCGAGTTGCAGAACTTGGAAAATGGGTGAGAAGGGAATTTCGTGTTTGTGGAAGTAGTTGGGATTCAAGTTGTGTAGATGCTGCTGCTGCTGGCCTGGGTTGGTTCGCCATTGGACTAAAAGGCGAGGCAGTCTTGAGCATATGGACTTACGAGGGGATCGAGGTTGTTATACGAAGTTCTGTCATTCCTTACAGATCAAACTTCTTTGAAGATGCTGGATTTACAGTCTCGAAAATTGTCTCCAAGGCTGATCAGGTTGCAAATAAACCACATGATCAAAGCGAAAAGAAGAAGAAAAAGGGTGACCCCAAAGTTCGTGTGCTGGCTGAGACGTCAGTATCGAAAGCTCGCTCCAATTATGATTCTGCTTAA 3036 46.54 MIDSLLLESYDASGGPLAGPTHGPLLCFTSPPTPFFFLFPFPFGAKQFYQGLFSGVNLISCCFLLDHSLTLQFSHLDDYMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVRVFTGLNPKPCGVRVEGRKKTAEQMLITRKLSASNLKSFLSLRFVSPSLTSHLFSSPFCLNPPILCPLPPTLSPSFSSKPTPPEASSLTRDGNYDEATSRFSLVCPGCGVHMQDTNPKHPGFFVKPSRKDSNYRLLTHLVPVDDESECSEFLKRGLVIEPDNQKTEENVTEKPHKPTVCSRCHSLRHYGKVKDPSVENLLPDFDFDHTIGRRLASTSGTRSVVLIVVDAADFDGSFPKKVANLVSATIEDNSAAWKQGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREGGINKITSLHMVSAVRDWGLKNLVEDVIELVGARGNVWAIGAQNAGKSTLINSIGKHVGGKITQLTEAPVPGTTLGIIRVEGIFPGQAKLFDTPGLLNPHQITTRLTREEQKLVHISKELKPRTYRIKVGHTIHVAGLMRLDVEETTVDTIYVTVWASPYLPLHMGKTENATKIQEDHFGNQLQPPIGKDRVAELGKWVRREFRVCGSSWDSSCVDAAAAGLGWFAIGLKGEAVLSIWTYEGIEVVIRSSVIPYRSNFFEDAGFTVSKIVSKADQVANKPHDQSEKKKKKGDPKVRVLAETSVSKARSNYDSA 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40024067 40032857 + CrPI670011_02g026800.1 Cre02g2680 491961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2680 1011 SUPERFAMILY RING/U-box 138 195 - -
Cre02g2680 1011 Pfam Sina, TRAF-like domain 300 397 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cre02g2680 1011 FunFam E3 ubiquitin-protein ligase SINAT5-like 265 397 - -
Cre02g2680 1011 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 156 191 IPR049548 -
Cre02g2680 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 804 IPR027417 -
Cre02g2680 1011 MobiDBLite consensus disorder prediction 976 994 - -
Cre02g2680 1011 MobiDBLite consensus disorder prediction 973 994 - -
Cre02g2680 1011 CDD YqeH 582 794 - -
Cre02g2680 1011 CDD RING-HC_SIAHs 154 192 - -
Cre02g2680 1011 Pfam 50S ribosome-binding GTPase 735 809 IPR006073 GO:0005525(InterPro)
Cre02g2680 1011 ProSiteProfiles Zinc finger SIAH-type profile. 209 269 IPR013010 GO:0008270(InterPro)
Cre02g2680 1011 FunFam E3 ubiquitin-protein ligase SINAT3 206 264 - -
Cre02g2680 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 264 IPR013083 -
Cre02g2680 1011 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 483 988 IPR050896 GO:0005739(PANTHER)
Cre02g2680 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 208 IPR013083 -
Cre02g2680 1011 Pfam Sina, zinc finger 205 280 - -
Cre02g2680 1011 SUPERFAMILY TRAF domain-like 209 400 - -
Cre02g2680 1011 ProSiteProfiles Zinc finger RING-type profile. 156 192 IPR001841 -
Cre02g2680 1011 Gene3D - 613 799 IPR027417 -
Cre02g2680 1011 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 270 397 IPR008974 GO:0005515(InterPro)
Cre02g2680 1011 Pfam YqeH-like, C-terminal 852 949 IPR048422 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2680 Cre-Chr2:40024067 Cre04g0159 Cre-Chr4:4287043 3.40E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2680 - - - 0.0