Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2715 ATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATACGAAATTGGTCGAACAATTGGTGAGGGTACATTTGCGAAAGTGAAAATTGCCAAAAATTCGGAGACTGGGGATCATGTAGCAATAAAGATTCTCGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATTGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTTGAGGTGATGGGGAGCAAAACCAAGATATTTATTGTTTTGGAATTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAATCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAAGGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTTATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATCAACCTTTATAAAAAGATCTCGGCTGCTGAATTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCTGTTTTTGAGGAGCCTAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTCAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCGAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATCGAAGAAGCTGCGAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTCTGCAAGTTGCACCTTCTGTCCATGTGGTTGAGATGAGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACGGAGGAAGACATGCAGGAAACAAATTTGGAAACTTTTGTTCTGCAGTCAACAAAGAAAGAAGATGAAATATAG 1380 40.22 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGDHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLKDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETNLETFVLQSTKKEDEI 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40328992 40334750 + CrPI670011_02g027150.1 Cre02g2715 491996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2715 459 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Cre02g2715 459 CDD STKc_SnRK3 17 272 - -
Cre02g2715 459 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2715 459 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Cre02g2715 459 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Cre02g2715 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 423 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre02g2715 459 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
Cre02g2715 459 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2715 459 Pfam NAF domain 313 372 IPR004041 GO:0007165(InterPro)
Cre02g2715 459 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2715 459 FunFam Non-specific serine/threonine protein kinase 11 314 - -
Cre02g2715 459 CDD CIPK_C 317 431 - -
Cre02g2715 459 FunFam Non-specific serine/threonine protein kinase 310 435 - -
Cre02g2715 459 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Cre02g2715 459 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Cre02g2715 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2715 459 Gene3D Kinase associated domain 1, KA1 310 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2715 Cre-Chr2:40328992 Cre03g1069 Cre-Chr3:9780132 2.30E-182 dispersed
Cre06g0997 Cre-Chr6:3515549 Cre02g2715 Cre-Chr2:40328992 9.10E-45 transposed
Cre10g1925 Cre-Chr10:33897332 Cre02g2715 Cre-Chr2:40328992 1.10E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63926 PF00069 Pkinase 1.10E-72 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2715 - - - 0.0