Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2717 ATGAGGCTCGACTCTCCTCTTTCATCTCTATTCTTCGACCTCTTCTGCGTACGGAGCTGCTCAATTCCGTCTCTGGTCTCCAGCTCTTTGGCTACTCCCTTCACTCCTGGCCTCAATTCCCAATTCAGGGTCTTCAGGGAAGGGAGATTACGCGTCCAAGGGAAGACTATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGCCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATTTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTGGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGAGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTGTTCCGGCATTTTGATCGTCATGCTCTAGAACTGTTGGAGAAGATGCTTACGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACGGATCCATTACCATGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATCCACAGCATGCACGCCTTCCACCTATTCAGCAATCGGGGCAAGCACATGCACAGATGCGACCAGTGCCTAACCAACCAATTCATGGGTCTCAACAACCAGTTCCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCGCCAGGTCCTGGTAGGTATCCCGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGCGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGCTGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCTGGAGGCGGCGGTGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCCGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAATCGCAACCAACAATATGGGTGGCAACAACAATGA 1719 47.0 MRLDSPLSSLFFDLFCVRSCSIPSLVSSSLATPFTPGLNSQFRVFREGRLRVQGKTMAVTAPGQLNVNEPPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHAQMRPVPNQPIHGSQQPVPAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGGGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQQ 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40339758 40346279 - CrPI670011_02g027170.1 Cre02g2717 491998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2717 572 CDD STKc_CDK9_like 81 380 - -
Cre02g2717 572 MobiDBLite consensus disorder prediction 429 456 - -
Cre02g2717 572 MobiDBLite consensus disorder prediction 484 503 - -
Cre02g2717 572 MobiDBLite consensus disorder prediction 543 572 - -
Cre02g2717 572 ProSiteProfiles Protein kinase domain profile. 81 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2717 572 SUPERFAMILY Protein kinase-like (PK-like) 75 388 IPR011009 -
Cre02g2717 572 Gene3D Phosphorylase Kinase; domain 1 68 177 - -
Cre02g2717 572 MobiDBLite consensus disorder prediction 391 572 - -
Cre02g2717 572 Pfam Protein kinase domain 81 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2717 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2717 572 SMART serkin_6 81 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2717 572 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524(InterPro)
Cre02g2717 572 MobiDBLite consensus disorder prediction 466 480 - -
Cre02g2717 572 PANTHER CELL DIVISION PROTEIN KINASE 81 380 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cre02g2717 572 MobiDBLite consensus disorder prediction 393 422 - -
Cre02g2717 572 FunFam Cyclin-dependent kinase C-2 178 420 - -
Cre02g2717 572 FunFam Cyclin-dependent kinase C-2 68 177 - -
Cre02g2717 572 Gene3D Transferase(Phosphotransferase) domain 1 178 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2717 Cre-Chr2:40339758 Cre10g1554 Cre-Chr10:29524189 1.60E-265 dispersed
Cre02g2717 Cre-Chr2:40339758 Cre05g0708 Cre-Chr5:6258340 8.20E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63928 PF00069 Pkinase 5.50E-75 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2717 K08819 - csv:101220936 979.163