Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2727 ATGGCATCCAAATTACATAACCGAACTTATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGATGGCTGCACCATTCTCACCCTCTACATTCCCGGCTTCAGCAAGGAGCAAATTCAGGTTAAGGTATCCTCAAGAAGAAAGTTGAGGATTAGTGGGGAACGGCCTTACAAGAACAGCAAGAGCGCATGGCAGCGCTTCCACAAGGAGTTTGAAATCGCATCAAACTGCGACACTGCCAACATTAGCGCCAAATACAAGGGCGGCATCCTTCATGTCCGCCAACCATTGTTGCAGGACCAGTCCGAGCCACACACACCACCCCATGACCAAACCCCCAAACAACAAGCTGAGAACCCAATTTTGGAAGAACCAAAGCAAACTAATTCATCTGCCAACCACCACGCTCCGGTTACAAACACTCCGAAGATCAACAACAAGCGCTTGAAGGAGATGATTCCCGGAGTGTTCCTGAAGTTGGGATTCTCTATTTTGCTGCCACTTATCTTATTGCTGTTTTGGATCAATGGACCAGCGATCAGCAACCGTGGATCCATGGTCAACGACTTGCAGAAGCTTCGGTTCCTCCACTCAATGCTGCATTGTTCTCACTGCCTCATTCACCGCCAACCCGATCGCTTCGATGACTTCATATGTTGTTCGGGCTGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATACTCGAAGCCGCCGCCAAATTGAAGAAGAGGAAGAAGGAGAAAAGGCAGCAACTCGTCTTAACATGCGACATCAAGGTGATAATCCTTCATCTTCCCTTAAAAAGGCAATCCTCCATATCCGATGGGATTGCGAGAATTTGCTCAGACATGGAGTTGGCCGTCCATTCCCCTCTTTCCTTCTCCACTTATTCATCTCACCCTCCCAATTCCTTAATCCCATCCCTACATAGAAGTAGACTCTTCAGTTTTCCGCCATTGTTATCGCCCCGTCTAAGCTTCCAGTTCCGGCCAAAGGGACGATCACTTCTTCAACCTCTACAAGCTTCCCGTTGGCTTCTGGCACCCGTCGGCGATGGAGAGTGGAAGCATATAGGTTCGAAAGTAGAAATGCCAGATGCTTTCGAAATTGTGTCGAATGAGGTCACCGTTGGCCGCCTTCCTGATAAAGCCGACATTGTAATTCCGGTTGCTACAGTTTCTGCTCTACATGCTCGCATCAAAAACCAAGAAGACAGGCTCTTGGTCATAGATCTAGACAGCACCAATGGGACTTTCATCGATGACAAGAGACTTAACCCTGGGGTTGTTGCTGCTGTATCATCTGGCAATTGCATTACTTTTGGTGACATCCATCTGGCCATGTTTCAGGTCTCAAAGCTGAAAACTGTTGAAGCTGCTACCAAAATCCAAGAAGAATCTGAGGAGCCAATCAGTGATTCTGGAACAAAAGTTAGGGGAGTGGAGTTGACTCCACTCCTTGCTTTGCTTAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTACATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 2397 47.6 MASKLHNRTYEDFEPPVERSEEDGCTILTLYIPGFSKEQIQVKVSSRRKLRISGERPYKNSKSAWQRFHKEFEIASNCDTANISAKYKGGILHVRQPLLQDQSEPHTPPHDQTPKQQAENPILEEPKQTNSSANHHAPVTNTPKINNKRLKEMIPGVFLKLGFSILLPLILLLFWINGPAISNRGSMVNDLQKLRFLHSMLHCSHCLIHRQPDRFDDFICCSGCGKVLGQFFGGKYIDHSKPILEAAAKLKKRKKEKRQQLVLTCDIKVIILHLPLKRQSSISDGIARICSDMELAVHSPLSFSTYSSHPPNSLIPSLHRSRLFSFPPLLSPRLSFQFRPKGRSLLQPLQASRWLLAPVGDGEWKHIGSKVEMPDAFEIVSNEVTVGRLPDKADIVIPVATVSALHARIKNQEDRLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQVSKLKTVEAATKIQEESEEPISDSGTKVRGVELTPLLALLNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFITEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGHPPQMQFLF 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40403098 40414479 - CrPI670011_02g027270.1 Cre02g2727 492008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2727 798 ProSiteProfiles Forkhead-associated (FHA) domain profile. 384 434 IPR000253 GO:0005515(InterPro)
Cre02g2727 798 Gene3D - 367 464 - -
Cre02g2727 798 Pfam Oxidoreductase NAD-binding domain 675 781 IPR001433 GO:0016491(InterPro)
Cre02g2727 798 Gene3D Translation factors 555 655 - -
Cre02g2727 798 MobiDBLite consensus disorder prediction 125 144 - -
Cre02g2727 798 SUPERFAMILY SMAD/FHA domain 375 458 IPR008984 GO:0005515(InterPro)
Cre02g2727 798 CDD FHA 377 455 - -
Cre02g2727 798 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 8 113 IPR002068 -
Cre02g2727 798 Pfam Oxidoreductase FAD-binding domain 567 665 IPR008333 -
Cre02g2727 798 PRINTS Cytochrome B5 reductase signature 651 665 - -
Cre02g2727 798 PRINTS Cytochrome B5 reductase signature 712 723 - -
Cre02g2727 798 PRINTS Cytochrome B5 reductase signature 615 622 - -
Cre02g2727 798 PRINTS Cytochrome B5 reductase signature 674 693 - -
Cre02g2727 798 PRINTS Cytochrome B5 reductase signature 768 776 - -
Cre02g2727 798 PRINTS Cytochrome B5 reductase signature 593 604 - -
Cre02g2727 798 FunFam Predicted protein 362 464 - -
Cre02g2727 798 SUPERFAMILY HSP20-like chaperones 6 101 IPR008978 -
Cre02g2727 798 CDD ACD_sHsps-like 20 95 - -
Cre02g2727 798 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 562 666 IPR017927 GO:0016491(InterPro)
Cre02g2727 798 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 768 776 IPR001709 GO:0016491(InterPro)
Cre02g2727 798 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 712 723 IPR001709 GO:0016491(InterPro)
Cre02g2727 798 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 674 693 IPR001709 GO:0016491(InterPro)
Cre02g2727 798 CDD cyt_b5_reduct_like 567 798 - -
Cre02g2727 798 PANTHER NADH-CYTOCHROME B5 REDUCTASE 533 798 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cre02g2727 798 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 654 793 IPR039261 -
Cre02g2727 798 SMART FHA_2 383 434 IPR000253 GO:0005515(InterPro)
Cre02g2727 798 FunFam NADH-cytochrome b5 reductase 656 798 - -
Cre02g2727 798 FunFam NADH-cytochrome b5 reductase 557 656 - -
Cre02g2727 798 SUPERFAMILY Riboflavin synthase domain-like 558 668 IPR017938 -
Cre02g2727 798 Pfam Hsp20/alpha crystallin family 28 103 IPR002068 -
Cre02g2727 798 Gene3D - 1 102 IPR008978 -
Cre02g2727 798 Gene3D - 656 798 IPR039261 -
Cre02g2727 798 Pfam FHA domain 384 451 IPR000253 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2727 K00326 - - csv:101219272 507.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2727 Cre-Chr2:40403098 Cre04g0607 Cre-Chr4:23386556 1.10E-118 dispersed
Cre02g2727 Cre-Chr2:40403098 Cre11g1965 Cre-Chr11:31423620 1.50E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011793 1 1 1 1 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 30