Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0329 ATGGCGGCTTCCAACCGCTGCATGAACACTTCTTGCAGAGCCGCCATCCCCCACGATTGGACCAAAGGATGGCCTCTGGGATCCGCCGGATACGCACATCTCTGCCTCAACTGCGGATCCGCTTATGAAAATTTAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGGGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGCACTAGCTGTGTGAAAAGATCTCGACTTGGAGTGATCCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCTTTCTGCCACCTACTTCTGTGGAGGATCAAGTGGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCAACCACTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGGAGAAAATCTCAGGAGCCCATTTGGAGAAGTTAGATCAAGCTTTTTTAATATGAATAAGCTACCTGTTAAATGCCAACCATCTGTTGGTTCATTAACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGAAAGAATCCCTAAGTCAGCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACTCCAAACTTTGTGGTACCCTTTTCAGGAAGTGCTGCTGAAGAGGATGAAAAGAGCATTCTGCCATTTCAACAGGGTCAAAGATCTCGTCCAATTTTTCCCAAGCTCATAAAAACTGGGACCGCAGTTAATTCCGAAGCAAGAAAGGGAATGGCACCTCTGGTACGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAAAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCCCAATCAGAAGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACTCCTTGCATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAGGCAACAAATTCTACTGATATACAGGATGCGAAGATCCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGAAGGAGATACTAGTTTGCGTAAAAGTGAAAATTCTGGGGGAAGGACAAATGATGCTTCAGGACAACAACCAGTGTTAACCATAGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAACAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCACCACCAAGTGCAAATCCCACCATTGTCACTATTGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGAGTTGTCCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAACAGGACAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTATTCAGGAACTTGAGCCTTCTGGTTTGGATGCACTAGCCAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAGGTACGACGACCAGGCATCCTCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAGGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTGCGCAAGAAGAAACGCCAATCAGAACGTGAAGTGGAAACTCTGCTCAAGGATAGGAATCCACAGTTCGATGAAACAGGAACGGGTGGGACACTGAGGGGTACGTCTCTGCAAACAAACTATTTAGAGAATGAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTGCAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGTGGGGACATGGAACTGGAGGGAGCAGGATTAAGCATGATGAGTCTTGTGGAGGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATTGGCATCTCCAGTGTCACGAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAGAGTGAGAGACGCCTGTCTGAGGAATCCGGCCGAGGATCTCTTTCTATCTTGTCCGAGTGTTCTGAGAAGATTCCTAAGCTCAGAAAAAGGCAAATACCGGCCAGGAAGGCAAGACTGGAGCTTGAAGCACTGTACGAGGGGGTGCCAGACGATTCGGTTAATCTCACTTTTCGACATCTCACGGATGTCAATCTTCAACCCAACTCCTCCTTTGAAAAGAGAAGAGGCACCCCATCAATTCCAATTCCAATTCCAATCCCAAGAGATAATGAGACTACCCCATTAAACAAACTCCCCAGCCTAGACTTCAACAGAGCTCTGCAAGCAGCCAACCAACAGTCCCGCCCCGATACCAAAATCAGCCTTCACCCGAGTGCGCAGGTAGGTGGAAATGGAAGTGCCGGCGACATTCAAAGCCATTCGAAGTCGGAGCATGTGGGTGGGTTAAGGCCGGCTTTGGAGTACACTGCGGCCTACGAGGAGGCAAGCCGCATCAGCGGTATGAGTTCCATGTATCAGCATCACAGGGCCACGGCCGGGACCGGGAGACGCCGCCCTGGGATTCCTCACTCCAATATATGCGCCAACTGCACCACCTACATCTATATCTTCCGACATCGTTGCCTGGTCTGTGGAAGAGTTTACTGCCGGCAATGCGTAAGAATAGGGATGGGGGAGATGACGGAGGGAAGAAAGTGTATGGAGTGTTTGGGAAGAAAATTCAGCCACAGATACATAGGGAAGGCAGGAGATGTGGGTTGCTTCGGCTGGAGGTACTCAACTGCGGTGAAGCAGGCGGAGCTCAAGTGGGCGGAGAAAGGGCCTCGCCGGAAAGGAGAGAGAAGGTACGGCGGTGGCGTAACCAACTCCATAAGCATGATGTCGGCAAGTCAGAGCCCATGGGCACCCACCACCACCAGCGTGGATGTTTCCACCATTTACAGCTCTCGTTTCGCCGTCATGTCGTCCCCGTCCCTATCCCCTCATTCTCCGGCTCACCGCCACCATTTACCCTTTTAG 3549 47.56 MAASNRCMNTSCRAAIPHDWTKGWPLGSAGYAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKGIHCGCIASKSMFECLDYGGIGCTSCVKRSRLGVIRRDEISNGFDAVTVGNVGFLPPTSVEDQVVRNGINEEKLLQLCNIMEANEPNHFQQSQRVDRSASPAQNRGENLRSPFGEVRSSFFNMNKLPVKCQPSVGSLTYSKLDTSRPHLELKDMKESLSQPSLNITLGVPLGTPNFVVPFSGSAAEEDEKSILPFQQGQRSRPIFPKLIKTGTAVNSEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDAKIPTLSNGSHSGDASFSGVFQNLPLRAEGDTSLRKSENSGGRTNDASGQQPVLTIEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCPDNVWDLSRCTCSAPEEISTKEQDNLLRASKDFKKRKIMKSQKSIQELEPSGLDALASAAVLGDSMADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDRNPQFDETGTGGTLRGTSLQTNYLENEGSQSRIKDEEAANSSGQIDLNCHPDRGDMELEGAGLSMMSLVEAASQPLDSYSKQIGISSVTSEQQSSQPSSVESERRLSEESGRGSLSILSECSEKIPKLRKRQIPARKARLELEALYEGVPDDSVNLTFRHLTDVNLQPNSSFEKRRGTPSIPIPIPIPRDNETTPLNKLPSLDFNRALQAANQQSRPDTKISLHPSAQVGGNGSAGDIQSHSKSEHVGGLRPALEYTAAYEEASRISGMSSMYQHHRATAGTGRRRPGIPHSNICANCTTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCMECLGRKFSHRYIGKAGDVGCFGWRYSTAVKQAELKWAEKGPRRKGERRYGGGVTNSISMMSASQSPWAPTTTSVDVSTIYSSRFAVMSSPSLSPHSPAHRHHLPF 1182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1727842 1738788 + CrPI670011_03g003290.1 Cre03g0329 492359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0329 1182 MobiDBLite consensus disorder prediction 952 983 - -
Cre03g0329 1182 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270(InterPro)
Cre03g0329 1182 CDD B3_DNA 334 435 IPR003340 GO:0003677(InterPro)
Cre03g0329 1182 SMART B3_2 336 436 IPR003340 GO:0003677(InterPro)
Cre03g0329 1182 MobiDBLite consensus disorder prediction 155 173 - -
Cre03g0329 1182 MobiDBLite consensus disorder prediction 952 990 - -
Cre03g0329 1182 MobiDBLite consensus disorder prediction 481 496 - -
Cre03g0329 1182 MobiDBLite consensus disorder prediction 475 496 - -
Cre03g0329 1182 Gene3D - 571 623 - -
Cre03g0329 1182 SUPERFAMILY DNA-binding pseudobarrel domain 333 437 IPR015300 -
Cre03g0329 1182 Gene3D - 314 441 IPR015300 -
Cre03g0329 1182 MobiDBLite consensus disorder prediction 911 938 - -
Cre03g0329 1182 MobiDBLite consensus disorder prediction 829 860 - -
Cre03g0329 1182 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Cre03g0329 1182 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677(InterPro)
Cre03g0329 1182 MobiDBLite consensus disorder prediction 829 843 - -
Cre03g0329 1182 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677(InterPro)
Cre03g0329 1182 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270(InterPro)
Cre03g0329 1182 MobiDBLite consensus disorder prediction 155 176 - -
Cre03g0329 1182 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 844 - -
Cre03g0329 1182 MobiDBLite consensus disorder prediction 767 800 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0329 Cre-Chr3:1727842 Cre10g2376 Cre-Chr10:37834668 1.40E-223 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53267 PF02362 B3 5.30E-16 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0329 K09287 - csv:101214226 1425.22