Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre03g0335 | ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCTAATTCTCATCCCTCCTTCACTTTCTCTACTCATCCTTTTATGACTTCTTCTTACTCTGACCTTCTAGCCTCCGGCAACAACCATCCTCCTTCCTCCGCCGCACCCCACGCCGTTCTCCGGGGTTCCGGCACCGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTCCCTCTCTCTCCTCCTCCCCTCTCTCCTTCTTCCTTTTTCGCTATTCCTCCTGGCTTGAGTCCCGCCGAGCTTCTTGATTCCCCTGTTCTTCTCAGTGCTTCTCATGTTTTGCCGTCGCCGACCACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCTGGGTATAATCAGCAGAGCATTAAGGAAGAAAACAAATATCTGTCTAATTTCTCATTTCAAACTCAATCGTCAAAGCTGCCGCCGACGTCTTTTCAACCTTCATCCACCACAGCTCCCACGACTCAGGGATGGACTTTTCAAGAACAGCGCAAGAAAGAGGATGGTTTTTCGTCGGAGAAGAATATGGTGAAACCGGAGTTCGGATCGATGCGGAGCTTCTCACCGGAATATGGGGTTGTTCAAAACCAAAACCAAACCAATGGCAGCGGGGAGTTGCAGTCTGATTACGGCAACAATTACCCTCAACAATCTCAGACGGTGAATCGAAGATCGGACGACGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCATCCAAAGCCCCAATCCACAAGGAGGTCGTCGCTGTCGTCGGCCGGTTCTTCCCACACCATGGTGGCTTCGATTCAGGCCACCAGCGAGATGGCGGACCAGTCATTTACAACCCAAGGCAGCGGCCAATTTGACGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATTGGCGACGACGACTTCGATCGGAGCTCTCAAAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGACGAACCAGAGGCTAAGAGATGGCGAAGAGAAGGTGACAACAATGAAGGTATTTCGGCGGTCGGTAGCCGGACGGTGAGAGAGCCGAGAGTCGTCGTCCAAACCACCAGCGACATCGACATTCTCGACGATGGTTACCGGTGGAGGAAGTATGGTCAGAAAGTTGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAATCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGAGCAGTGATCACAACTTACGAAGGGAAGCACAACCACGATGTTCCACCGGCACGTGGGAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCCAACAACGAAGCTCCGGCAACTGCGATCCGGCCATCGGCGTTGACCCATCAGTCAAACAACGGGGGGCATCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGATTCCCAAGCAGCATTCACAGTGGAAATGGTGCAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGAATGGGAATGGGTTCCTACATCAACCAAACACAGCCCAATGATAATTTGTTCACCAGAGCCAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTAG | 1755 | 50.26 | MASSSGSLDTSANSHPSFTFSTHPFMTSSYSDLLASGNNHPPSSAAPHAVLRGSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKYLSNFSFQTQSSKLPPTSFQPSSTTAPTTQGWTFQEQRKKEDGFSSEKNMVKPEFGSMRSFSPEYGVVQNQNQTNGSGELQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHTMVASIQATSEMADQSFTTQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRREGDNNEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNEAPATAIRPSALTHQSNNGGHLQGLRLQQSSDSQAAFTVEMVQNGNGFSFPEFGNSMGMGMGMGSYINQTQPNDNLFTRAKEEPRDHDMFIQSLLC | 584 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1785502 | 1787814 | - | CrPI670011_03g003350.1 | Cre03g0335 | 492365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre03g0335 | 584 | FunFam | WRKY transcription factor | 227 | 296 | - | - | |
Cre03g0335 | 584 | MobiDBLite | consensus disorder prediction | 149 | 171 | - | - | |
Cre03g0335 | 584 | SUPERFAMILY | WRKY DNA-binding domain | 235 | 295 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | MobiDBLite | consensus disorder prediction | 200 | 236 | - | - | |
Cre03g0335 | 584 | ProSiteProfiles | WRKY domain profile. | 237 | 295 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | MobiDBLite | consensus disorder prediction | 286 | 392 | - | - | |
Cre03g0335 | 584 | MobiDBLite | consensus disorder prediction | 462 | 492 | - | - | |
Cre03g0335 | 584 | MobiDBLite | consensus disorder prediction | 149 | 241 | - | - | |
Cre03g0335 | 584 | FunFam | WRKY transcription factor 33 | 398 | 464 | - | - | |
Cre03g0335 | 584 | Pfam | WRKY DNA -binding domain | 237 | 293 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | Pfam | WRKY DNA -binding domain | 412 | 469 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | SMART | WRKY_cls | 236 | 294 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | SMART | WRKY_cls | 411 | 470 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | SUPERFAMILY | WRKY DNA-binding domain | 403 | 471 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 161 | 493 | IPR044810 | GO:0003700(InterPro) | |
Cre03g0335 | 584 | ProSiteProfiles | WRKY domain profile. | 406 | 471 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | MobiDBLite | consensus disorder prediction | 348 | 383 | - | - | |
Cre03g0335 | 584 | MobiDBLite | consensus disorder prediction | 31 | 76 | - | - | |
Cre03g0335 | 584 | Gene3D | WRKY domain | 223 | 296 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | Gene3D | WRKY domain | 398 | 464 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre03g0335 | 584 | MobiDBLite | consensus disorder prediction | 291 | 347 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g0335 | Cre-Chr3:1785502 | Cre10g2352 | Cre-Chr10:37666503 | 3.70E-89 | dispersed | |
Cre03g0335 | Cre-Chr3:1785502 | Cre02g2227 | Cre-Chr2:35905384 | 1.70E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53268 | PF03106 | WRKY | 3.60E-25 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre03g0335 | K13424 | - | csv:101207158 | 1036.94 |