Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0344 ATGGAATCAAAGTGTAGCAAGTTATGGTGTGCTTTGGTGTTTGCTTCTTTGATAACTCTAAGCTCTGGCAGTTTATCCGCTACCTACTATAAGAGTTCATGTCCAAAGTTACTCTCCATTGTTCGACGTGAAGTCGTGAAAGCAGTGGACAAAGAGTACAGAATGGGAGCTTCGTTGCTTCGCCTCCATTTTCACGACTGCTTTGTCAATGGATGTGATGCATCGGTGCTATTGGACGACACGTCAAACTTCACTGGAGAAAAGACGGCAATCCCAAACAAAGATTCGTTGAGAGGTTTTGAAGTGATCGACTCAATTAAAACGCTAGTGGAAGCTGCTTGTCCTTCTGTGGTTTCTTGTGCTGATATTTTGTCCCTTGCAGCCCGAGACTCGGTGGTTACCCTTGGGGGGCCTTCGTGGGTAGTTGGGCTTGGGCGGAGGGACTCGACCACAGCCAGCTTCGACAGCGCAAACAATGATCTTCCTTCTCCCTTCCTCGACCTTCCCGATCTCATCTCTGCCTTTTCCAACAAAGGCTTCGACACCAAAGAATTGGTCGCCCTTTCAGGATCTCACACGATCGGACAAGCCAGGTGCTCCATGTTCAGAGTAAGAGCCCATAACGAAACCACCACCATTGATTCAGAGTTTGCAGCCTCTCTAAGATCCAATTGCCCTTTCTCCGGCGACGACCAAAGTCTTTCTCCTTTGGATCTCAAAACCCAATCCTTATTCGACAATGCTTATTTCAAGAATTTGGTCCAAAACAAAGGCCTTCTTCATTCCGACCAAGCCCTCTTCAGCAACTCCTCCGCCGATTCTCATGTCACTTCCTATGTCTCCGACTCTTCTGCTTTCTTCTCCGACTTCGCCGCCGCCATGGTTAAGATGTCCAACCTCTCCCCACTCACCGGCTCCGACGGCCAGATTCGTTCCGACTGCCGCAAAATTAACTAA 957 48.69 MESKCSKLWCALVFASLITLSSGSLSATYYKSSCPKLLSIVRREVVKAVDKEYRMGASLLRLHFHDCFVNGCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDSIKTLVEAACPSVVSCADILSLAARDSVVTLGGPSWVVGLGRRDSTTASFDSANNDLPSPFLDLPDLISAFSNKGFDTKELVALSGSHTIGQARCSMFRVRAHNETTTIDSEFAASLRSNCPFSGDDQSLSPLDLKTQSLFDNAYFKNLVQNKGLLHSDQALFSNSSADSHVTSYVSDSSAFFSDFAAAMVKMSNLSPLTGSDGQIRSDCRKIN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1882541 1884489 + CrPI670011_03g003440.1 Cre03g0344 492374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0344 318 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cre03g0344 318 ProSiteProfiles Plant heme peroxidase family profile. 24 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 FunFam Peroxidase 28 164 - -
Cre03g0344 318 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 Gene3D Peroxidase, domain 2 162 297 - -
Cre03g0344 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Cre03g0344 318 FunFam Peroxidase 162 297 - -
Cre03g0344 318 Pfam Peroxidase 41 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 SUPERFAMILY Heme-dependent peroxidases 25 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PANTHER PEROXIDASE 72-RELATED 14 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 CDD secretory_peroxidase 25 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre03g0344 318 Gene3D - 28 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0344 Cre-Chr3:1882541 Cre07g0626 Cre-Chr7:4032851 2.00E-92 dispersed
Cre08g1278 Cre-Chr8:25928698 Cre03g0344 Cre-Chr3:1882541 4.90E-17 dispersed
Cre11g1063 Cre-Chr11:8063455 Cre03g0344 Cre-Chr3:1882541 9.90E-100 wgd
Cre02g2220 Cre-Chr2:35861048 Cre03g0344 Cre-Chr3:1882541 5.30E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0344 K00430 - csv:101221157 560.451