Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0393 ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGACGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTTCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAATTTTACAGCTTTGGAAGAACATGGACATTTGGTTTGAGCTTACTTGGATTGGCCCCACTTGCAGAACGTGTCAGTTTTCTGACTGAGCAGATTGCATGCTTCACGGGGCCCACAGTTGGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATATTTGCTTTGCATCAAAACAAAGTTCATGTCTTGAAGTTTTCTCTTTTGGGTTCTATTATCTCCAATTTACTTCTAGTCCTTGGCACATCCCTTTTCTTTGGTGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCAAAGGTGGCCAATGTGAGCTCTGTGGTGTTGCTGTTGGGATTGGTATGCCAAATGCTGCCATTGATGTTCACATTTGCATCACCCAAAATCTCAACAGATTTTTCTTTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCACAGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGAAGAGGATGAAGAAGAAAGGGCAGTGGTTGGATTTTGGAGCTCATTTGGTTGGTTGGTTGGTATGACCATAGTCATAGCTATTTTATCACAATACATTGTGGCAACAATTGAGGATGCATCAAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTTTGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATAACACTAGGGATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTATTGGATGGTGCATGGGCATCAAAATGGATCTTGATTTTGGTATCCTTGAAACAACTTCTCTTGCCTTTACCATCATCTTGACTATCTTCACCTTACAGGATGGAAGTTCACATTACATCAAAGGAATGGTACTTGTCCTATGTTATGTAGCAATTTCTTCCTGTTTTTTTTGTTCATAA 1191 41.81 MGLNEPLVFGDLEINGGGETATVAVVRFGLVRDLWGNLVKVVFGTKLSLLFPAIPLAMAAEFYSFGRTWTFGLSLLGLAPLAERVSFLTEQIACFTGPTVGGLVNATCGNATELIIAIFALHQNKVHVLKFSLLGSIISNLLLVLGTSLFFGGLSNLNKQQTFNPKVANVSSVVLLLGLVCQMLPLMFTFASPKISTDFSLLQLSRTCSLLMLTAYIAYVFFQLKTHHQFFGLPQEEEDEEERAVVGFWSSFGWLVGMTIVIAILSQYIVATIEDASKSWGVSVSFISIILLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIIGWCMGIKMDLDFGILETTSLAFTIILTIFTLQDGSSHYIKGMVLVLCYVAISSCFFCS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2385772 2392613 + CrPI670011_03g003930.1 Cre03g0393 492423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0393 396 Pfam Sodium/calcium exchanger protein 251 389 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre03g0393 396 Pfam Sodium/calcium exchanger protein 68 224 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre03g0393 396 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 31 395 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cre03g0393 396 Gene3D - 98 237 IPR044880 -
Cre03g0393 396 Gene3D - 243 393 IPR044880 -
Cre03g0393 396 NCBIfam calcium/proton exchanger 52 394 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cre03g0393 396 FunFam Vacuolar cation/proton exchanger 238 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0393 Cre-Chr3:2385772 Cre10g0647 Cre-Chr10:6088277 9.00E-87 dispersed
Cre10g2310 Cre-Chr10:37336169 Cre03g0393 Cre-Chr3:2385772 9.10E-119 wgd
Cre03g0393 Cre-Chr3:2385772 Cre04g0802 Cre-Chr4:26701840 2.70E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0393 K07300 - csv:105436053 650.973