Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0444 ATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCAGGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCTAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGGAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGACGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTCCAGAAGTATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCGTCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCAACAGTGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCAATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCACACAGTTACATGGGTATGCCGGTCGCTCATCCGGGAAGCGCACAGGGATACCCTGGCTTTGAAACGCATCCTTTCAACATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 50.45 MGEEVKMAEYESGGGGDDENCAQEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTNSGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPVAHPGSAQGYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2838756 2839760 - CrPI670011_03g004440.1 Cre03g0444 492474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0444 334 Gene3D - 152 214 - -
Cre03g0444 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677(InterPro)
Cre03g0444 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 294 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre03g0444 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Cre03g0444 334 MobiDBLite consensus disorder prediction 93 150 - -
Cre03g0444 334 MobiDBLite consensus disorder prediction 96 150 - -
Cre03g0444 334 Pfam Myb-like DNA-binding domain 158 207 IPR001005 -
Cre03g0444 334 MobiDBLite consensus disorder prediction 1 23 - -
Cre03g0444 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Cre03g0444 334 FunFam Two-component response regulator 151 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0444 Cre-Chr3:2838756 Cre05g0777 Cre-Chr5:6852882 5.60E-21 dispersed
Cre04g0637 Cre-Chr4:23986529 Cre03g0444 Cre-Chr3:2838756 8.50E-37 transposed
Cre10g1770 Cre-Chr10:32074803 Cre03g0444 Cre-Chr3:2838756 1.40E-36 transposed
Cre02g2302 Cre-Chr2:36539536 Cre03g0444 Cre-Chr3:2838756 3.80E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53275 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0444 - - - 0.0