Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0450 ATGGATAATCTCCTTGAAGATTTTCCCAATTCCTGGAATAATTATCACTTCTATCCCCATCTCTCTAATGGCTTGTTCAAAGTCAATCGCGAATCCGTTGATCCCCTTCAAATTCCGGCCAAATCCCAGCAGCATCAACACCAACTCAGTAATAATTCCTCTTCGTCGCCGTCGTCGTCGAGCTCCGAAGGTGACTCGCCGGACAGCCATGACACTTCCAATACGATGCTCAAATACATCACTGAGATGCTGATGGATGAAGGAGAAGATCTCAAAACACAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGCCAGAAGTATCCCCCTTCTCCAATCGGAAATGGCGATTCTTCTCAGGATTTGCGCTGTGATAGGGCTGTGAGTAATAACGGTGAAGATGAATCGGAATCTTTATATGGTAACTCCTCTGTTTTTGCCCCTTTTCAAAACTCTCTTTTGAATCAAGACTCGTTTCTTGGGATGCAATTTATTGGGCATTTTAGGCAAGGAGCTGAAGAGGCTAGCAAGTTTCTTCCTGTTAATGGAAGATTTGGAACCATTGACTTGGATAATGATTCTTCTACCTCTCTTCCCTCTAGGGCTGTTGATTTTTCTTGGGTTGGTGCTGAAAATGATGGTAGATCCAGCCTTGAAAATGGGTTATTAAGAGAGAAGAAAAACCGTCTTAGGGAGGATAGTGATGAGGAGTTGAGAAGTAGTAAACAATCTGCTAACTTTGCCGATGATAATTCACTGTCTGATTTGTTTGATGAGGTTCTTCTTTGTCGGGGTGAGAGTCGGCAGTCCCCATCGTGTGGTTCCGATGAATCGTCGGAGAGCGAAGCGAATAAGAAGTCGAGAGGGAGAGGGAAAAGGAAAGGGAAGAAGACCACTCGTTCTAGGAAGCAAGAGAATAGTGTGGGAGTTGTGGATTTGTGGACATTGTTGACTCAATGTGCTCAGGCTGTTTCAAATTATGATCAAAGGACTGCAAATGAGTTGCTAAATCAGATTAGGCAGCATTCTAATCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTTGCCAAGGGTCTCGAGACTCGGCTCGCTGCCGGGACGCCTCTGTATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCTTGCCCGTTTCGGCGGATGTCGTATTTCTATGCCAATAGAACGATTCTGAAGCTAGCTGAGAAAGTAACAACTTTGCATATTGTTGATTTTGGTATTTTGTATGGTCTCCAATGGCCTTGCTTGATTCAACGGCTCTCGCGTAGACCTGGTAGACCTCCCAAGCTTCGGATCACGGGGATTGAGCTTCCCCAGCCAGGATTCCGACCTGCTGAACGTGTTGAGCAGACTGGCCGTCGCCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAGAAATGGGAAACGGTTCGATATGAGGATCTCAATCTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCTGACGAAACGGTGGTCGCAAACAGCCCAAGAGACAGGGTTCTAAAGTTAATCAGGAAAATCAACCCAGATCTCTTCATTCATGAAGTCACCAATGGCTCATTCAATACTCCATTCTTCAACACAAGGTTTAAGGAAGCACTCTTTTACTACTCATCGTTATTCGACATGTACGAGGCAACTGTACCTCGAGACAATCCGCAGAGGCATCTTTGTGAGAAGGAAATCCTAGGAAGAGACATCATGAACGTCATAGCGTGCGAGGGGCTCGAGAGAGTCGAAAGGCCAGAGACTTACAAGCAATGGCAAGTAAGGAACACGAGGGCTGGGTTCAAACAAGTACCATTAGACCAAGATCTGCTGAAGAGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGTGATCGATCAGGATGGGTCGTGGATGTTGCAAGGGTGGAAGGGACGGATCATCGACGCGTTATCGTGTTGGGTAGTTGCCTAA 2091 45.34 MDNLLEDFPNSWNNYHFYPHLSNGLFKVNRESVDPLQIPAKSQQHQHQLSNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEGEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPIGNGDSSQDLRCDRAVSNNGEDESESLYGNSSVFAPFQNSLLNQDSFLGMQFIGHFRQGAEEASKFLPVNGRFGTIDLDNDSSTSLPSRAVDFSWVGAENDGRSSLENGLLREKKNRLREDSDEELRSSKQSANFADDNSLSDLFDEVLLCRGESRQSPSCGSDESSESEANKKSRGRGKRKGKKTTRSRKQENSVGVVDLWTLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYANRTILKLAEKVTTLHIVDFGILYGLQWPCLIQRLSRRPGRPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRHLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFVIDQDGSWMLQGWKGRIIDALSCWVVA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2911442 2913532 - CrPI670011_03g004500.1 Cre03g0450 492480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0450 696 MobiDBLite consensus disorder prediction 278 315 - -
Cre03g0450 696 Pfam GRAS domain family 326 693 IPR005202 -
Cre03g0450 696 MobiDBLite consensus disorder prediction 237 254 - -
Cre03g0450 696 MobiDBLite consensus disorder prediction 39 73 - -
Cre03g0450 696 MobiDBLite consensus disorder prediction 237 256 - -
Cre03g0450 696 ProSiteProfiles GRAS family profile. 315 694 IPR005202 -
Cre03g0450 696 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 298 693 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0450 Cre-Chr3:2911442 Cre10g0686 Cre-Chr10:6513436 3.80E-56 dispersed
Cre02g0494 Cre-Chr2:2100628 Cre03g0450 Cre-Chr3:2911442 7.70E-31 transposed
Cre04g1365 Cre-Chr4:32480482 Cre03g0450 Cre-Chr3:2911442 5.20E-33 transposed
Cre04g1759 Cre-Chr4:35605072 Cre03g0450 Cre-Chr3:2911442 2.20E-51 transposed
Cre05g2260 Cre-Chr5:34164253 Cre03g0450 Cre-Chr3:2911442 6.80E-38 transposed
Cre06g1912 Cre-Chr6:26016054 Cre03g0450 Cre-Chr3:2911442 7.50E-44 transposed
Cre09g0088 Cre-Chr9:1134961 Cre03g0450 Cre-Chr3:2911442 1.20E-15 transposed
Cre09g0930 Cre-Chr9:9445925 Cre03g0450 Cre-Chr3:2911442 2.80E-57 transposed
Cre10g2227 Cre-Chr10:36712493 Cre03g0450 Cre-Chr3:2911442 7.70E-151 wgd
Cre02g2309 Cre-Chr2:36606469 Cre03g0450 Cre-Chr3:2911442 9.50E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53276 PF03514 GRAS 1.50E-114 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0450 K27753 - csv:101217374 1224.54