Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0457 ATGGCTAAAACCGCCATTCTCCTCTGCATTGCGACTATCATTTCAACAATGTGGACGGCCGGCGCCAGAATTCCCGGCGTCTACTCCGGCGGCCCGTGGGAGAGTGCCCATGCCACGTTCTACGGCGGCTCCGATGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTTAACAATGGGCTGAGCTGCGGCGCCTGTTTCGAAATCAAATGTGCAAATGACCCGAGATGGTGCCATTCCGGCAGCCCGTCGATTATTATTACGGCCACTAATTTCTGTCCGCCGAACTTTGCTTTGCCCAGTGACAATGGCGGATGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTTAAGATCGCTGAGTATCGCGCCGGAATCGTCCCCGTCGCCTACCGCCGAGTGGCATGCCGGAAGCAAGGGGGGATCCGGTTCACAATCCACGGGTTCCGATACTTCAACTTGGTGTTAATCACCAACGTCGCGGGTGCAGGGGACATCGTGAAGGTGAGCGTGAAAGGCACGCGCACCGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGCCAGGCCTTGTCTTTTAGAGTCACAGGCAGTGACAGACGGACTTCCACCTCCTTCAACGTGGCGCCTTCTGATTGGCAGTTCGGTCAGACCTTCACCGGCAAGAATTTTAGGGTTTGA 780 56.28 MAKTAILLCIATIISTMWTAGARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIIITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3010152 3011952 + CrPI670011_03g004570.1 Cre03g0457 492487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0457 259 FunFam Expansin 22 161 - -
Cre03g0457 259 CDD DPBB_EXPA_N 32 160 - -
Cre03g0457 259 Gene3D - 21 161 IPR036908 -
Cre03g0457 259 SMART dpbb_1 68 155 IPR007112 -
Cre03g0457 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cre03g0457 259 PANTHER EXPANSIN-A15 10 257 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 FunFam Expansin 165 257 - -
Cre03g0457 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cre03g0457 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cre03g0457 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cre03g0457 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cre03g0457 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cre03g0457 259 Gene3D - 165 257 IPR036749 -
Cre03g0457 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cre03g0457 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Cre03g0457 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cre03g0457 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cre03g0457 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cre03g0457 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Cre03g0457 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0497 Cre-Chr1:4275432 Cre03g0457 Cre-Chr3:3010152 7.30E-113 dispersed
Cre03g0457 Cre-Chr3:3010152 Cre05g2585 Cre-Chr5:37029535 6.50E-102 dispersed
Cre02g0660 Cre-Chr2:3552998 Cre03g0457 Cre-Chr3:3010152 2.30E-73 transposed
Cre09g1686 Cre-Chr9:34701851 Cre03g0457 Cre-Chr3:3010152 1.80E-75 transposed
Cre02g2314 Cre-Chr2:36638863 Cre03g0457 Cre-Chr3:3010152 2.10E-137 wgd
Cre03g0457 Cre-Chr3:3010152 Cre04g0909 Cre-Chr4:27752284 5.80E-135 wgd
Cre03g0457 Cre-Chr3:3010152 Cre07g0690 Cre-Chr7:4766594 2.90E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0457 - - - 0.0