Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0473 ATGAGCAAAAGCGCCGTTACAACAAACGTCAAAACTACTAACAAACAGCTTCTAAATCCGTCTTCTGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCACGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTACGATAAACTTGATATATCTGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCATAAGGAGACTGTCCGAAAAATTACAGTTAGTTGGAATATCCGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAACCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGATAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCTTCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTACTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGCGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACGCAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCCGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGCACAGGATCCCCCAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCACCTCTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGGGAACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTCGAGCACGCGGCACATCAGGATGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGGTAGCTGA 2082 46.93 MSKSAVTTNVKTTNKQLLNPSSAMEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRIRRLSEKLQLVGISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTENLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQDELRVLRLQSSESQPQSQPSQSTSTTEVVGS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3130810 3135610 + CrPI670011_03g004730.1 Cre03g0473 492503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0473 693 FunFam RING-type E3 ubiquitin transferase 281 354 - -
Cre03g0473 693 PANTHER U BOX DOMAIN-CONTAINING 51 654 - -
Cre03g0473 693 FunFam RING-type E3 ubiquitin transferase 555 672 - -
Cre03g0473 693 CDD RING-Ubox_PUB 282 334 IPR045210 -
Cre03g0473 693 SMART Ubox_2 284 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0473 693 MobiDBLite consensus disorder prediction 670 693 - -
Cre03g0473 693 SUPERFAMILY RING/U-box 278 357 - -
Cre03g0473 693 MobiDBLite consensus disorder prediction 250 279 - -
Cre03g0473 693 Gene3D - 30 140 IPR036537 GO:0007166(InterPro)
Cre03g0473 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Cre03g0473 693 FunFam RING-type E3 ubiquitin transferase 28 141 - -
Cre03g0473 693 FunFam RING-type E3 ubiquitin transferase 364 515 - -
Cre03g0473 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 531 571 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 408 448 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 449 489 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 572 612 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 614 654 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 490 530 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 Gene3D - 369 562 IPR011989 -
Cre03g0473 693 MobiDBLite consensus disorder prediction 257 276 - -
Cre03g0473 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 Pfam Mixed lineage kinase domain-like N-terminal domain 52 139 IPR054000 -
Cre03g0473 693 SUPERFAMILY ARM repeat 379 652 IPR016024 -
Cre03g0473 693 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0473 693 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0473 693 Pfam Armadillo/beta-catenin-like repeat 408 447 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 Pfam Armadillo/beta-catenin-like repeat 491 529 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 Pfam Armadillo/beta-catenin-like repeat 573 612 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 CDD MLKL_NTD 33 161 - -
Cre03g0473 693 Gene3D - 563 680 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1292 Cre-Chr1:26158037 Cre03g0473 Cre-Chr3:3130810 1.90E-10 dispersed
Cre03g0473 Cre-Chr3:3130810 Cre05g2297 Cre-Chr5:34538688 2.50E-116 dispersed
Cre07g1008 Cre-Chr7:12813482 Cre03g0473 Cre-Chr3:3130810 3.80E-66 transposed
Cre11g1810 Cre-Chr11:29702577 Cre03g0473 Cre-Chr3:3130810 1.30E-36 transposed
Cre07g1210 Cre-Chr7:25372065 Cre03g0473 Cre-Chr3:3130810 1.80E-24 transposed
Cre08g1657 Cre-Chr8:29080466 Cre03g0473 Cre-Chr3:3130810 8.40E-36 transposed
Cre02g2329 Cre-Chr2:36774721 Cre03g0473 Cre-Chr3:3130810 4.90E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0473 K27628 - csv:101218572 1148.27