Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0473 ATGAGCAAAAGCGCCGTTACAACAAACGTCAAAACTACTAACAAACAGCTTCTAAATCCGTCTTCTGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCACGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTACGATAAACTTGATATATCTGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCATAAGGAGACTGTCCGAAAAATTACAGTTAGTTGGAATATCCGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAACCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGATAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCTTCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTACTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGCGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACGCAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCCGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGCACAGGATCCCCCAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCACCTCTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGGGAACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTCGAGCACGCGGCACATCAGGATGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGGTAGCTGA 2082 46.93 MSKSAVTTNVKTTNKQLLNPSSAMEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRIRRLSEKLQLVGISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTENLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQDELRVLRLQSSESQPQSQPSQSTSTTEVVGS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3130810 3135610 + CrPI670011_03g004730.1 Cre03g0473 492503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0473 693 FunFam RING-type E3 ubiquitin transferase 281 354 - -
Cre03g0473 693 PANTHER U BOX DOMAIN-CONTAINING 51 654 - -
Cre03g0473 693 FunFam RING-type E3 ubiquitin transferase 555 672 - -
Cre03g0473 693 CDD RING-Ubox_PUB 282 334 IPR045210 -
Cre03g0473 693 SMART Ubox_2 284 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0473 693 MobiDBLite consensus disorder prediction 670 693 - -
Cre03g0473 693 SUPERFAMILY RING/U-box 278 357 - -
Cre03g0473 693 MobiDBLite consensus disorder prediction 250 279 - -
Cre03g0473 693 Gene3D - 30 140 IPR036537 GO:0007166(InterPro)
Cre03g0473 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Cre03g0473 693 FunFam RING-type E3 ubiquitin transferase 28 141 - -
Cre03g0473 693 FunFam RING-type E3 ubiquitin transferase 364 515 - -
Cre03g0473 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 531 571 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 408 448 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 449 489 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 572 612 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 614 654 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 SMART arm_5 490 530 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 Gene3D - 369 562 IPR011989 -
Cre03g0473 693 MobiDBLite consensus disorder prediction 257 276 - -
Cre03g0473 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 Pfam Mixed lineage kinase domain-like N-terminal domain 52 139 IPR054000 -
Cre03g0473 693 SUPERFAMILY ARM repeat 379 652 IPR016024 -
Cre03g0473 693 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0473 693 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre03g0473 693 Pfam Armadillo/beta-catenin-like repeat 408 447 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 Pfam Armadillo/beta-catenin-like repeat 491 529 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 Pfam Armadillo/beta-catenin-like repeat 573 612 IPR000225 GO:0005515(InterPro)
Cre03g0473 693 CDD MLKL_NTD 33 161 - -
Cre03g0473 693 Gene3D - 563 680 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0473 K27628 - - csv:101218572 1148.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1292 Cre-Chr1:26158037 Cre03g0473 Cre-Chr3:3130810 1.90E-10 dispersed
Cre03g0473 Cre-Chr3:3130810 Cre05g2297 Cre-Chr5:34538688 2.50E-116 dispersed
Cre07g1008 Cre-Chr7:12813482 Cre03g0473 Cre-Chr3:3130810 3.80E-66 transposed
Cre11g1810 Cre-Chr11:29702577 Cre03g0473 Cre-Chr3:3130810 1.30E-36 transposed
Cre07g1210 Cre-Chr7:25372065 Cre03g0473 Cre-Chr3:3130810 1.80E-24 transposed
Cre08g1657 Cre-Chr8:29080466 Cre03g0473 Cre-Chr3:3130810 8.40E-36 transposed
Cre02g2329 Cre-Chr2:36774721 Cre03g0473 Cre-Chr3:3130810 4.90E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g428 . Blo03g01237 Bda02g00818 . . Bpe08g01367 Bma14g00501 . Cmo13g00131 . Cma01g00596 Cma13g00132 Car01g00541 Car13g00102 . . Cpe20g00814 Bhi08g00620 . . . . . . Cla02g01975 Cam02g2095 Cec02g2133 Cco02g2163 Clacu02g2083 Cmu02g2020 Cre02g2329 . . Cone18ag0344 Cone11ag1246 Lsi02g01363 Csa06g01498 Chy11g01242 Cme11g01284 . Blo14g00121 Bda07g00590 . . Bpe11g00764 . Bma11g00122 Sed05g2955 . . . Cma20g00410 . Car20g00358 . . Bhi10g00688 Tan05g0378 Cmetu11g2533 . . . . Cla03g00152 Cam03g0158 Cec03g0157 Cco03g0164 Clacu03g0161 Cmu03g0778 Cre03g0473 . Csa01g02400 Chy12g00185 Cme12g00199
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004307 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43