Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0474 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCACCACCACCATCCTCAGATAAGTAATAATAATGGATCTCCTCAACACCAACACCACCTTCTTTCATTGCCTACTCAACAACTCTCCTCCGCACCGTTGTCTCATGTCGGTGGTGGCGGTGGTGTTAGCTCAATCCGGCGTGGTTCGATGGCAGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACGGCACTCAAGTGTCCTCGATGTGATTCAACCAACACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGCTGCCGCCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCGGTTGGGGGCGGTTGTCGCCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCGGCTGCAGCTCCGGCCGGAAATGAAACTCAAGTGATGAATAACAATTCAAACTCACCCACCACTACTACAATACCCTTGCACAGTAGTGCTGAGAATATTATTGGTCATTTACAGCCTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTCAACGAGATCCAGGCTCAAGGTAACGATATCGGCAACGGCGCCCTTCTGAATCATCATCTGTGGCGTGGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCCACCCGGGTTGTACCCGTTTCAAATTAGCGGCGGGGACGGCGACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCCAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGAAGCCCCTATTGACCAGATCATTATCTTCAAATTGGCATCTCTCAGCTCACAGCTTTGTAGCACTCTTCTAGCTCTCTTCAGCCTCTGA 1044 46.65 MDFSSVPIYLDPPPNWHQQSNHHHHHHPQISNNNGSPQHQHHLLSLPTQQLSSAPLSHVGGGGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAPAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQGNDIGNGALLNHHLWRGSQNFPLSGGLETPPGLYPFQISGGDGDDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNEAPIDQIIIFKLASLSSQLCSTLLALFSL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3153121 3154582 + CrPI670011_03g004740.1 Cre03g0474 492504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0474 347 MobiDBLite consensus disorder prediction 134 170 - -
Cre03g0474 347 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre03g0474 347 MobiDBLite consensus disorder prediction 11 41 - -
Cre03g0474 347 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre03g0474 347 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 79 201 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre03g0474 347 Pfam Dof domain, zinc finger 88 143 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre03g0474 347 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0476 Cre-Chr1:4125629 Cre03g0474 Cre-Chr3:3153121 3.50E-37 dispersed
Cre01g1492 Cre-Chr1:28170307 Cre03g0474 Cre-Chr3:3153121 6.50E-21 dispersed
Cre03g0474 Cre-Chr3:3153121 Cre07g0681 Cre-Chr7:4608318 7.80E-42 dispersed
Cre10g2214 Cre-Chr10:36623748 Cre03g0474 Cre-Chr3:3153121 2.90E-41 wgd
Cre02g2330 Cre-Chr2:36784936 Cre03g0474 Cre-Chr3:3153121 5.10E-38 wgd
Cre02g2389 Cre-Chr2:37327454 Cre03g0474 Cre-Chr3:3153121 4.40E-29 wgd
Cre03g0474 Cre-Chr3:3153121 Cre04g0923 Cre-Chr4:27900575 1.40E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53277 PF02701 zf-Dof 1.50E-32 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0474 - - - 0.0