Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0521 ATGAACACCCTTCCGGCGAAAATGGTTGAGAGTCTCTCTTTAATCAGAACCTTTGCGACTTTTCCCTCTTCTCACCGAGGTTCTCCCAATTATGGGCTAGTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTAAAAAGAGGTGAGGCGAGTATCCTTGAGAAGTCTTTGAACCCGGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACTGATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGACGGTGGCGTTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGTACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACACTTGAAAGACCCAACAACAAGAATATGGAGAATGATTCTTCTTCCGCTATGGAAATCAAAGGCCTTCCCACTTACGACGGCAAATACTTACTCTACAATGTTCTCGGCAACTTCTTCGAGGTCTCTGCCAAGTACTCCCCTTCAATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACCAATTCTGAGACGAAAGAAGAGGTAGCGATTAAGAAGATTGGGAATGCTTTTGATAATAGGATTGATGCCAAGAGGACCCTTCGTGAGATTAAACTCCTTTGCCATATGGATCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAGAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCACCAGATCATACGCTCTACCCAGGCTCTGACAGACGATCACTGTCAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACTTGCTTCTTAATGCAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTAACACGATGGTATCGAGCCCCTGAGCTACTACTCAACACTTCTGAATACACAGCAGCAATAGATATTTGGTCGGTTGGATGTATTCTCATGGAAATTCTTAGGAGGGAGCCACTGTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACTGAGTTGCTAGGTTCACCAGATGACTCAGATCTTGGGTTTCTTAGAAGTGATAATGCAAGGAAGTATGTTAAGCAACTTCCTTATTTCCCGAAACAACCGCTAACCGAAAAGTTCCCAGATCTTCCTCCACTAGCAGTTGATCTAGCAGAGAGGATGCTGCTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCGATGAATCACCCATATATAGTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTCGAACAGGCATCCTTGGATGAAGAAGACATAAAAGAGCTTATATGGAGGGAGTCTCTCAATTTCAATCCAAATCACATTTAG 1941 42.86 MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERPNNKNMENDSSSAMEIKGLPTYDGKYLLYNVLGNFFEVSAKYSPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSTQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPYFPKQPLTEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLNFNPNHI 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3788070 3800168 + CrPI670011_03g005210.1 Cre03g0521 492551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0521 646 NCBIfam L-threonylcarbamoyladenylate synthase 75 265 IPR006070 GO:0003725(InterPro)
Cre03g0521 646 SMART serkin_6 314 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0521 646 Pfam Protein kinase domain 318 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0521 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0521 646 FunFam Mitogen-activated protein kinase 299 408 - -
Cre03g0521 646 ProSiteProfiles Protein kinase domain profile. 314 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0521 646 ProSitePatterns Protein kinases ATP-binding region signature. 320 344 IPR017441 GO:0005524(InterPro)
Cre03g0521 646 Gene3D Phosphorylase Kinase; domain 1 297 637 - -
Cre03g0521 646 SUPERFAMILY YrdC/RibB 75 264 IPR017945 -
Cre03g0521 646 Gene3D Transferase(Phosphotransferase) domain 1 398 627 - -
Cre03g0521 646 FunFam Mitogen-activated protein kinase 398 627 - -
Cre03g0521 646 ProSitePatterns MAP kinase signature. 349 452 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0521 646 ProSiteProfiles YrdC-like domain profile. 73 261 IPR006070 GO:0003725(InterPro)
Cre03g0521 646 Gene3D DHBP synthase 66 270 - -
Cre03g0521 646 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 307 637 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cre03g0521 646 FunFam YrdC N6-threonylcarbamoyltransferase domain containing 66 269 - -
Cre03g0521 646 SUPERFAMILY Protein kinase-like (PK-like) 317 606 IPR011009 -
Cre03g0521 646 CDD STKc_TEY_MAPK 307 643 - -
Cre03g0521 646 Pfam Telomere recombination 82 259 IPR006070 GO:0003725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0521 Cre-Chr3:3788070 Cre06g1109 Cre-Chr6:4984382 1.00E-167 dispersed
Cre03g0516 Cre-Chr3:3701048 Cre03g0521 Cre-Chr3:3788070 2.70E-149 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63935 PF00069 Pkinase 5.30E-69 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0521 K04371 - csv:101218403 731.095