Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0539 GGGACAAAGAGAGGAGATATGATGTCTGAATTTGATGGCCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACACAATCCTAATTCCAACCCTAATTCACTTGTTGTTCCTCTTAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCCAACCTTCATAAACAACAACTTTTCTCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCGCCACCGCCACTGTCGCTGCCGATCAATCCTCCCTTGCCCACAATTTTCCTAACATTATCTCCGACCACGACGGCGACCACAAGCCCCATCCTCTTCCGCTGTCGTCGCCACCGCAGCTCCCGCTCTGGCTCGACCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACTGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCACTCCTCCAAAATGCCGCCCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACCGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGCCGCGGTCTTATCGGATGGCCGTCCCATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACTCCGGTGGGTTCCAATCAATACAGTGATCAGAGCCCCGGCCATTAG 1275 50.9 GTKRGDMMSEFDGLSGLSTISNLIGQHNPNSNPNSLVVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHHHHHPTFINNNFSPTSSSLLLQPNFATATVAADQSSLAHNFPNIISDHDGDHKPHPLPLSSPPQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPLTTASSYAAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAAAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSNQYSDQSPGH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4045656 4048315 - CrPI670011_03g005390.1 Cre03g0539 492569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0539 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 408 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre03g0539 424 Pfam Zinc finger, C2H2 type 70 92 IPR013087 -
Cre03g0539 424 SMART c2h2final6 146 166 IPR013087 -
Cre03g0539 424 SMART c2h2final6 70 92 IPR013087 -
Cre03g0539 424 SMART c2h2final6 111 141 IPR013087 -
Cre03g0539 424 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Cre03g0539 424 Gene3D Classic Zinc Finger 66 93 - -
Cre03g0539 424 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 172 210 - -
Cre03g0539 424 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 107 141 - -
Cre03g0539 424 FunFam protein indeterminate-domain 12-like 49 117 - -
Cre03g0539 424 Gene3D Classic Zinc Finger 103 195 - -
Cre03g0539 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cre03g0539 424 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cre03g0539 424 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Cre03g0539 424 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 145 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0539 Cre-Chr3:4045656 Cre10g2152 Cre-Chr10:36064706 9.70E-87 dispersed
Cre03g0539 Cre-Chr3:4045656 Cre04g1553 Cre-Chr4:34142591 2.50E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53283 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0539 K25870 - csv:101212420 613.224