Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre03g0539 | GGGACAAAGAGAGGAGATATGATGTCTGAATTTGATGGCCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACACAATCCTAATTCCAACCCTAATTCACTTGTTGTTCCTCTTAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCCAACCTTCATAAACAACAACTTTTCTCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCGCCACCGCCACTGTCGCTGCCGATCAATCCTCCCTTGCCCACAATTTTCCTAACATTATCTCCGACCACGACGGCGACCACAAGCCCCATCCTCTTCCGCTGTCGTCGCCACCGCAGCTCCCGCTCTGGCTCGACCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACTGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCACTCCTCCAAAATGCCGCCCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACCGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGCCGCGGTCTTATCGGATGGCCGTCCCATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACTCCGGTGGGTTCCAATCAATACAGTGATCAGAGCCCCGGCCATTAG | 1275 | 50.9 | GTKRGDMMSEFDGLSGLSTISNLIGQHNPNSNPNSLVVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHHHHHPTFINNNFSPTSSSLLLQPNFATATVAADQSSLAHNFPNIISDHDGDHKPHPLPLSSPPQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPLTTASSYAAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAAAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSNQYSDQSPGH | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4045656 | 4048315 | - | CrPI670011_03g005390.1 | Cre03g0539 | 492569 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre03g0539 | 424 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 29 | 408 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre03g0539 | 424 | Pfam | Zinc finger, C2H2 type | 70 | 92 | IPR013087 | - | |
Cre03g0539 | 424 | SMART | c2h2final6 | 146 | 166 | IPR013087 | - | |
Cre03g0539 | 424 | SMART | c2h2final6 | 70 | 92 | IPR013087 | - | |
Cre03g0539 | 424 | SMART | c2h2final6 | 111 | 141 | IPR013087 | - | |
Cre03g0539 | 424 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 124 | 203 | - | - | |
Cre03g0539 | 424 | Gene3D | Classic Zinc Finger | 66 | 93 | - | - | |
Cre03g0539 | 424 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 172 | 210 | - | - | |
Cre03g0539 | 424 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 107 | 141 | - | - | |
Cre03g0539 | 424 | FunFam | protein indeterminate-domain 12-like | 49 | 117 | - | - | |
Cre03g0539 | 424 | Gene3D | Classic Zinc Finger | 103 | 195 | - | - | |
Cre03g0539 | 424 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 70 | 92 | IPR013087 | - | |
Cre03g0539 | 424 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 72 | 92 | IPR013087 | - | |
Cre03g0539 | 424 | SUPERFAMILY | beta-beta-alpha zinc fingers | 69 | 166 | IPR036236 | - | |
Cre03g0539 | 424 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 145 | 169 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g0539 | Cre-Chr3:4045656 | Cre10g2152 | Cre-Chr10:36064706 | 9.70E-87 | dispersed | |
Cre03g0539 | Cre-Chr3:4045656 | Cre04g1553 | Cre-Chr4:34142591 | 2.50E-87 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53283 | PF12171 | zf-C2H2_jaz | 6.00E-05 | CL0361 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre03g0539 | K25870 | - | csv:101212420 | 613.224 |