Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0548 ATGGAGAAAAGGGAGGCACATACGGTGGTGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACAGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTTGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCAGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTGCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTGGGACTTGA 531 42.18 MEKREAHTVVVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNIASPQSYQTYSYLFEEGNILEPLGT 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4224671 4226835 - CrPI670011_03g005480.1 Cre03g0548 492578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0548 176 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Cre03g0548 176 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Cre03g0548 176 Coils Coil 93 120 - -
Cre03g0548 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0548 Cre-Chr3:4224671 Cre07g0805 Cre-Chr7:6832827 3.20E-36 dispersed
Cre03g0548 Cre-Chr3:4224671 Cre03g0550 Cre-Chr3:4254034 5.60E-65 proximal
Cre02g2394 Cre-Chr2:37371432 Cre03g0548 Cre-Chr3:4224671 6.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53284 PF03195 LOB 6.20E-39 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0548 - - - 0.0