Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0550 ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCGCCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGCGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA 609 50.74 MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4254034 4255019 + CrPI670011_03g005500.1 Cre03g0550 492580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0550 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 158 - -
Cre03g0550 202 MobiDBLite consensus disorder prediction 1 29 - -
Cre03g0550 202 Coils Coil 117 144 - -
Cre03g0550 202 MobiDBLite consensus disorder prediction 1 20 - -
Cre03g0550 202 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Cre03g0550 202 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1708 Cre-Chr2:30223707 Cre03g0550 Cre-Chr3:4254034 6.20E-51 dispersed
Cre02g2394 Cre-Chr2:37371432 Cre03g0550 Cre-Chr3:4254034 2.00E-55 dispersed
Cre03g0550 Cre-Chr3:4254034 Cre07g0805 Cre-Chr7:6832827 9.80E-37 dispersed
Cre03g0548 Cre-Chr3:4224671 Cre03g0550 Cre-Chr3:4254034 5.60E-65 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53285 PF03195 LOB 4.50E-41 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0550 - - - 0.0