Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0588 ATGGAGAAATCTGGATATGGTCGCGATGGAATTTTCAGGTCTTTACGGCCTCCGCTCGTCTTTCCTAAAGATCCCAATCTCTCGATGATCTCTTTCCTCTTCCGAAATTCGTGTTCTTATCCAAATAGACTAGCCATTGTGGATGCGGAATCTTCTGATTCTGTGTCGTATTCACAACTTAAAGCCTCTGCAATTAGGGTCTCCAATGGGTTGATCCAATTGGATATCGAGAAAAACGACGTGGTGTTGATTTTTGCTCCAAATTCAGTTCAGTTCTCCATTTGTTTCATTGGGATTATTGCTATTGGGGCTATTGTAACCACTTGTAATCCTGTCTACACGGTCTCTGAGCTAACCAAGCAAGTTAAAGATGCTAAACCCAAACTTGTGATATCTGTTGCTGAATTGTGGGACAAAGTGAAGGATCTAAACATCCCAACTGTGTTACTGGACCAGCAGATTCCTTCAGCAATTCACTCTTCCAAAATATTATGTTTCAATGATTTGATGAACATGGCTGGTGATAAATCTGGGTCTGAGTTCCCAATTGTTGGGGTGAAACAGAGTGATACAGCTGCACTTCTGTATTCATCAGGAACAACAGGAGCTAGTAAGGGTGTGATTCTGACTCATAGAAACTTCATAACGTCTTCATTGATGATTACAATGGATCAGACGTTTAGGGGAGAGGAACATGGCGTATATCTGAACTTCTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCGCAGCTGCAGAAAGGAAACAGCATTGTCTCTATGCCAAAGTTTAACCTGGAGAAGGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATATGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTAGCAAAGCAGAGTGTGGTGAAGAAGTACAACCTTTCATCTGTGAAGCGTGTTGGTTCTGGGGCTGCACCTCTCGGGAAGGAATTAATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTCTCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTTGCTTTGGAGAATCCAGAAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTGGAGGCTAAAATAGTCAGTGTAGATACTTTGAAGCCTCTACCTCCTAATCAATATGGAGAGATACATGTTCGGGGACCAAACATGATGCGGGGTTATTTCAACAATCCAGAAGCCACCAAGCAAACTATTGATAAATATGGCTGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAATGGTCAGCTTTATGTTGTCGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCTCCAGCTGAGCTTGAAGCACTGTTGGTTTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTACCCCGATGCTGAAGCTGGAGAAGTTCCAATCGCATATGTTGTTCGATCTGCCAATAGTTCTTTGACCGAAGAGGACATCCTTAAATTCATTGCTGATCAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTGACATTCATCAGCAGTGTTCCCAAGTCTGTTTCTGGGAAAATCCTCAGGAGAGAACTCATTGAAAAAGTAAGAGCTAAAATTTAA 1632 43.08 MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNSCSYPNRLAIVDAESSDSVSYSQLKASAIRVSNGLIQLDIEKNDVVLIFAPNSVQFSICFIGIIAIGAIVTTCNPVYTVSELTKQVKDAKPKLVISVAELWDKVKDLNIPTVLLDQQIPSAIHSSKILCFNDLMNMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFITSSLMITMDQTFRGEEHGVYLNFLPMFHVFGLACITYAQLQKGNSIVSMPKFNLEKALWAVEKYKVTDMWVVPPVVLALAKQSVVKKYNLSSVKRVGSGAAPLGKELMEECANNIPSAVVLQGYGMTETCGVVALENPEVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMRGYFNNPEATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVRSANSSLTEEDILKFIADQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKVRAKI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4659825 4662508 - CrPI670011_03g005880.1 Cre03g0588 492618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0588 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
Cre03g0588 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cre03g0588 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 535 - GO:0016405(PANTHER)
Cre03g0588 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Cre03g0588 543 Gene3D - 441 542 IPR045851 -
Cre03g0588 543 CDD 4CL 21 535 - -
Cre03g0588 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Cre03g0588 543 Gene3D - 10 440 IPR042099 -
Cre03g0588 543 Pfam AMP-binding enzyme 39 403 IPR000873 -
Cre03g0588 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0588 Cre-Chr3:4659825 Cre10g2123 Cre-Chr10:35815935 7.30E-180 dispersed
Cre03g0588 Cre-Chr3:4659825 Cre10g1429 Cre-Chr10:27987157 2.80E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0588 K01904 - csv:101220141 1006.9