Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0599 ATGCTGTCTGTGTATGAGCTTCCGCCACTGGCTCGGCACGTGAAGGAGGCATTTTTCGTTCTGCATGTGAAGGTTTTACCGACACAGTGTGGAATTTCGCACTGTTCATCTTGTGTTATGGATAATTATTGGCTAGTTATCACCGGCTTTAGAGGTAGACTGGTCCAAACGTCAGCTCCAACTTGCTTCCCGGCTCTGATGGTAAATACGATATTGCTTTTTATGGTTTATCGCAATATGCATGTTGCTCAACAAAGTCGGCGCGATAAGTTAAGAGTTCCGCAGAATTATTTGCGAGTGGGGGATTTATCAAGGAACTCTGATGAACAATTGAATTTTCACAACTCCGAGCATTTGGGGCTTGATCTGGATCTTGTTAGAATTCAAAGTTATAACAAGGATGCGATTTTGACTCATGATCACTTGTCTTCGTTACCCTCAGAAATGATCAATTTCTCGAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAATTGGAAGACCCAGCTCAATGCAGTAGACAAATTGTGACAGATGCCTCTGGTGGAATTGTAAATAATGGTGTTGATTATTGGAAAAGCTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAATAATCCATCCAACGAGACATTCAATCAGGATGGACAAAAGCGTATAGGAGGAGAATTGCACTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCCATTCGAACTCAGGGCCTGGAAATGGCATCCATTGTGCAGCATAATTTCACTGAAATTAACCAAACTGCTGCTTGTGAAGGCAGTGGGAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGTCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGCTCTATTGCTAGAAAAACCGACGAAGAGTTAAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCCCTGTCGCTGTCTTCGAATCCGCCGTCTAAATTGCCCACCACACAGTTCGTAGAATCAGAGGAATTACAGGAAAGTATCACTGTGTTGAAAAATACCCAAGAATCCAAAACAGTCAAATCTGAGAATTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTCAATCCATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGCTGTTAGATGAATTTTGTGGCTCAAGTGGTCATTATAAGCTTGTCCAACCATGTGAGGTATTTGAGAAGACACCTGGGGAAGTTGGTGTCTCAGCGGCCCTTAATGCATTTAGAAATGAGGCTGTTAAGGAAAATAGTTCGTGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTCCGGTCTCTGAAGAATGCCATCTCGGAGCAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCCCCCTCTGCTGGGACAAGTGGCAGCAAAGGTGGTGATGCAAATTCGGTTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTTGAATCCCAAAATGCATGGAGGCCACAGAGAGGGTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACTCAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGGTGTCAAATTGGTTCATAAATGCCCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAATCCATGGTGCGAGAGATGGAAGTTCTACATTAGAGAAGACTGCCGGTTGGACCAGTAGTGAACGCCAGCCTCTAAAAAACCATGGTGTTACAAATGAAATGGCTAGTCATCATTTGCAGTGCTTGGGGGTAGATTCCTCAAGTGGCGACAGAAATGGACTCGGCTGCAGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAACTGATGGGGTTCGTGCCATATCAAGCCAGTGCAGCTGAGGTTGGAGGACTTGGAGCTGTCTCTCTAACATTAGGCCTTCGCCATCGAGTCGAGAGTGCCCACCATGAACAGCAGCGGCATCAAATGCAGCAACAAGATGACCAACTAATACGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGTTACATTGCGTGGGCAGGAGCCCAAGTCGCCTGTTCGAGGGTTCAGAAAGTTGAAACAGCTCTCGGCAATCTCTCCATATCTCAGATGAAAAAACCTGTTATGATGTTGCTTCTGAAAGAACAATACACTCTTTTGAAAAGAGCATTCTACAATGAGCAGAGACGCATTGGTGCTAACTTCAGCGGCTATAATGAATATATTCTCTTCGGCTTTTCTATTCTAAAACATGTTATTTAG 2928 43.65 MLSVYELPPLARHVKEAFFVLHVKVLPTQCGISHCSSCVMDNYWLVITGFRGRLVQTSAPTCFPALMVNTILLFMVYRNMHVAQQSRRDKLRVPQNYLRVGDLSRNSDEQLNFHNSEHLGLDLDLVRIQSYNKDAILTHDHLSSLPSEMINFSRDSNVLSHQRDMMLRQELEDPAQCSRQIVTDASGGIVNNGVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMASIVQHNFTEINQTAACEGSGNELALLPVYRDQSNVLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLSLSLSSNPPSKLPTTQFVESEELQESITVLKNTQESKTVKSENLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSSGHYKLVQPCEVFEKTPGEVGVSAALNAFRNEAVKENSSCADASTFCGSNESNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGGDANSVRLKYMEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDSDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKIHGARDGSSTLEKTAGWTSSERQPLKNHGVTNEMASHHLQCLGVDSSSGDRNGLGCSDQQWDQGKQSKLDNGVQSNMEGELMGFVPYQASAAEVGGLGAVSLTLGLRHRVESAHHEQQRHQMQQQDDQLIRHYGSEMIHDFVGYIAWAGAQVACSRVQKVETALGNLSISQMKKPVMMLLLKEQYTLLKRAFYNEQRRIGANFSGYNEYILFGFSILKHVI 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4845081 4851417 + CrPI670011_03g005990.1 Cre03g0599 492629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0599 975 Gene3D - 678 740 - -
Cre03g0599 975 ProSiteProfiles 'Homeobox' domain profile. 672 735 IPR001356 GO:0003677(InterPro)
Cre03g0599 975 SUPERFAMILY Homeodomain-like 676 741 IPR009057 -
Cre03g0599 975 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 384 767 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre03g0599 975 SMART HOX_1 675 739 IPR001356 GO:0003677(InterPro)
Cre03g0599 975 FunFam BEL1-like homeodomain protein 9 678 740 - -
Cre03g0599 975 SMART prehox3 457 616 IPR006563 -
Cre03g0599 975 MobiDBLite consensus disorder prediction 367 388 - -
Cre03g0599 975 CDD homeodomain 675 736 IPR001356 GO:0003677(InterPro)
Cre03g0599 975 Pfam Homeobox KN domain 692 731 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre03g0599 975 Pfam Associated with HOX 462 615 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0599 Cre-Chr3:4845081 Cre04g1254 Cre-Chr4:31285032 1.00E-62 dispersed
Cre03g0599 Cre-Chr3:4845081 Cre10g2260 Cre-Chr10:36943790 6.50E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53290 PF07526 POX 1.50E-42 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0599 - - - 0.0