Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0607 ATGGAGTCTACTATTGTGATTAAGGCCAGGTATGGAGAAATGCTAAGGCGCTTTAGTGTTAGAGTCTATGAAAACAGTAGACTGGATCTGGACATGAATGGGTTGAGAGCAAAAATACGTAATCTCTTCAACTTCTCTTCTGATGCTGACTTTACATTGACTTACATTGATGAAGATGGTGATGTTGTGTCCCTGGTCGATGATGATGATCTGCATGAAATGATGAGGCAACAGTTGAAGTTCTTGAGAATTGATGTGCATCTGAGAAATAAGGAAAATGACAAATCTCATGATAGATCAGATGGAAGTTCTACCCTTATGACATCAGAACGTCCATTTCAAGATGTTTGTAGTGGTATCTCTGACGTTTTGAAATCTATGCCTGAGCCCTTACCTGAATTTTGTTCACAGTTCCTCCTTGACATTGCTTCAAAAGCTGTTAGTAACCCTGTGCTTTCTGAGCTTGCTCAAAGCTTTATTCGGTTGGGAAACACACACCTGCACACAGGTTCTCAGGCCTCATCTGTTCCAGAGACGAGCACACAGAGTGTCGCCACTGCGTGTTCTACGCCACCTCTAGGTGCAGATTCAAAAGCTTCAAACAATGATGGCTTTCATCAAGAAGCTGGGTCAAAATTTCAATGCACTGGTTCTTCTTATAAAGATGGAAAGATAACTAACAGTGAGAGTGCGACAAAGAACATTGGTGTATCTGCACCTGTTTTTGATCTTGATGCCCTTCCTGGGAAGCCAGCTATTGCCGACCATTGCTGCAGCTCTTTTGATGGAAAGAAGAAGGAAAAACGCAATGATGGATTTCTTGATGCCCTCCAAGAAATGCATATAAGTAATCTTCCAGCATCGTTGATCAATAACTCACATCATTCATCCGCCACTTATATGGATGGTAGGTTTATTAACGAGTGCCCTTTTAGTGGAGTACCTGTGGCTCCTCGATCGTCTATGCTTGGAACTGTAGGTATAGATCCAGTAAGTAGCAGTAGTGGTTACACTGAATCTGTGGGAAGTATGTTCCATAAAGGTCCAATAGCCAGCAGCAGTGGCGACATTGAAGCATTCCATGAAGATCCAATAATTAGCAGCAGAGGTTGCTTTGGAACTGTGGGAAGTATGTTCCATAAAGGTGTTATTTGTGATGGATGTGGAGCCCGTCCAATAACTGGTCCGCGGTTCAAGTCCCAAGTGAAAGATAATTATGATCTCTGTAGCATCTGCTTTGCTAAAATGGGCAATGAGGCTGACTATATTAGGATCGATCGTCCTGTCTCTTGCCGGAATCCAAGAATGAAAGGATTCAACCGTAGATATCCATTTCCTGGCCCCCAAATAATCGATGCTTTGAGAGGTCCTGTTAAGCAGACCAAGCTTGATAGTTGCTTCGTAGCTGACGTTAATGTATTTGATGGCACTGTGATGGCTCCATGTATCCCATTTACCAAGATATGGCGATTGCGTAATAGTGGGACTTCGAATTGGCCCCGTGGTACACAGCTAGTGTGGATTGGAGGAGACAAGTTGGGTTGTTCAGTACCGGTCGAAATAGAGGTTCCTGCTGATGGACTTCCTCTGGGTCAGGAAATTGAAGTTGCAGTTGACTTTACTACCCCTCCATGTTCTGGTCAATACACCTCATACTGGAGGATGGCATCTCCATCTGGCCAGAGATTTGGGCAACGTGTTTGGGTTCTTATTCAGGTTGATGAAGCACTTGGGATGCCGGATTCCAATTATTCCCAAGCTTTGGACTTAAATTTACCCCCCATCATAGATCGTGCCCATGAAGGTGTACAAAAGAATTCAACTCCTGCAATTTCTGATGGTGTCCTTTTTCCTCCTCGCGATTCCATCCCCATCAATGAACTGCCAAAGCTTGATCATAATCTGTCTGCAACTGATCCGGATTTACAACTCCTCGTAGATCAGGGTATTCTAGTTGGCGAAAGCCCTACTACTTTTGCTAGGGAGGATAATTTGGGCTCGTCTAGCTCTGCTGCTGATCGCCATGGAGTTCTACCTAGTTCAACCAAGGTTCCCCCAGAGCCATATTCTCCTTTTGATTTTCCTGTACTAACTCCACCTGCAAACCCGCCTCCAACACCATCCCCCAAGGTTTCGCCAGCATCATCTGAAGATGTCACTGCCAACAATGCCAATAACATTATTGAAGAAACTCTTCTTAAAACACTCGAGGATATGGGATTCAAACAGGTTGATCTAAACAAGGAAGTACTGAAGAGGAATAAGTACGATCTAGGGCAGTCGGTGGATGATCTCTGCAGAGTTGATGAATGGGATCCGATGCTTGATGAGTTGGAGGAAATGGGATTCAGTGACAAGGAAATGAACAAAAGACTTCTGAAGAAGAACAATGGCAGCGTGAAGCGAGTAGTGATGGAACTTCTTTATGGGGAGAATGCTTAG 2442 44.02 MESTIVIKARYGEMLRRFSVRVYENSRLDLDMNGLRAKIRNLFNFSSDADFTLTYIDEDGDVVSLVDDDDLHEMMRQQLKFLRIDVHLRNKENDKSHDRSDGSSTLMTSERPFQDVCSGISDVLKSMPEPLPEFCSQFLLDIASKAVSNPVLSELAQSFIRLGNTHLHTGSQASSVPETSTQSVATACSTPPLGADSKASNNDGFHQEAGSKFQCTGSSYKDGKITNSESATKNIGVSAPVFDLDALPGKPAIADHCCSSFDGKKKEKRNDGFLDALQEMHISNLPASLINNSHHSSATYMDGRFINECPFSGVPVAPRSSMLGTVGIDPVSSSSGYTESVGSMFHKGPIASSSGDIEAFHEDPIISSRGCFGTVGSMFHKGVICDGCGARPITGPRFKSQVKDNYDLCSICFAKMGNEADYIRIDRPVSCRNPRMKGFNRRYPFPGPQIIDALRGPVKQTKLDSCFVADVNVFDGTVMAPCIPFTKIWRLRNSGTSNWPRGTQLVWIGGDKLGCSVPVEIEVPADGLPLGQEIEVAVDFTTPPCSGQYTSYWRMASPSGQRFGQRVWVLIQVDEALGMPDSNYSQALDLNLPPIIDRAHEGVQKNSTPAISDGVLFPPRDSIPINELPKLDHNLSATDPDLQLLVDQGILVGESPTTFAREDNLGSSSSAADRHGVLPSSTKVPPEPYSPFDFPVLTPPANPPPTPSPKVSPASSEDVTANNANNIIEETLLKTLEDMGFKQVDLNKEVLKRNKYDLGQSVDDLCRVDEWDPMLDELEEMGFSDKEMNKRLLKKNNGSVKRVVMELLYGENA 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4998563 5002478 + CrPI670011_03g006070.1 Cre03g0607 492637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0607 813 ProSiteProfiles Zinc finger ZZ-type profile. 380 430 IPR000433 GO:0008270(InterPro)
Cre03g0607 813 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 767 810 IPR015940 -
Cre03g0607 813 Gene3D - 770 812 - -
Cre03g0607 813 SUPERFAMILY RING/U-box 378 430 - -
Cre03g0607 813 CDD NBR1_like 461 574 IPR032350 -
Cre03g0607 813 SUPERFAMILY CAD & PB1 domains 1 87 - -
Cre03g0607 813 CDD UBA_NBR1 770 808 - -
Cre03g0607 813 CDD UBA_NBR1 729 766 - -
Cre03g0607 813 Gene3D - 374 425 IPR043145 -
Cre03g0607 813 FunFam protein NBR1 homolog 770 812 - -
Cre03g0607 813 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 808 - -
Cre03g0607 813 MobiDBLite consensus disorder prediction 660 676 - -
Cre03g0607 813 SMART PB1_new 4 89 IPR000270 GO:0005515(InterPro)
Cre03g0607 813 MobiDBLite consensus disorder prediction 684 711 - -
Cre03g0607 813 SMART zz_5 379 424 IPR000433 GO:0008270(InterPro)
Cre03g0607 813 Pfam Zinc finger, ZZ type 380 415 IPR000433 GO:0008270(InterPro)
Cre03g0607 813 MobiDBLite consensus disorder prediction 169 203 - -
Cre03g0607 813 Gene3D - 724 769 - -
Cre03g0607 813 Pfam PB1 domain 4 86 IPR000270 GO:0005515(InterPro)
Cre03g0607 813 SUPERFAMILY UBA-like 771 808 IPR009060 GO:0005515(InterPro)
Cre03g0607 813 Gene3D Immunoglobulins 458 577 IPR013783 -
Cre03g0607 813 Pfam Ig-like domain from next to BRCA1 gene 472 573 IPR032350 -
Cre03g0607 813 ProSiteProfiles PB1 domain profile. 4 89 IPR053793 -
Cre03g0607 813 Gene3D - 1 89 - -
Cre03g0607 813 MobiDBLite consensus disorder prediction 659 719 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0607 K17987 - - csv:101205935 1074.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1236 Cre-Chr1:25552648 Cre03g0607 Cre-Chr3:4998563 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41