Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0610 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGATGAATCTGATCCCGAGTTCGTCGAGATTGATCCTACTGGTCGATATGGAAGGTATAAAGAAATTTTGGGCAAAGGGGCATTCAAAAGGGTATATCGGGCTTTTGATGAGTTGGAAGGGATTGAAGTAGCTTGGAATCAGGTTAAGGTAACGGATCTATTGCGAAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAGAACATTAACTTCATTACTGAGATATTTACTTCAGGGACACTACGACAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCATTGAAAAAGTGGTCCAGGCAGATATTAGAGGGCCTTCTATATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTAAATGGCAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCCGCCATTCTTCAACAAGCTCGTTCAGCCCACAGTGTCATTGGGACACCCGAATTTATGGCTCCGGAGCTGTATGAGGAGGAATACAATGAGCTTGTGGATATTTATGCCTTTGGAATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATATTGAATGTGCAAATGCTGCTCAAATCTATAAGAAGGTCACATCAGGGATTAAACCGGCTTCATTGGCAAAAGTCACTGATTTAGGAGTGAAAGCATTTATAGAAAAATGTATTGCAAATGTCTCTGATCGTTTACCTGCAAAAGATCTTTTAAAAGATCCATTTCTCCAAGCAGATGATGATCATGAAAGTGCATCTCGTCATTTACAATCAAAGACCCTTCATGCAGGAAAAAGAGAGCAAATTGATTTTGATCGAAGTGTAGATGATACTTCTGTTGAGACAAGCAGAGATTTTAGTATGCATGGCGAGAGGAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCTGATTCCATGGGTAATTATCGCAATATCCATTTCCCATTTGATATTGAAGCCGACACAGCAATTTCTGTTGCTAGTGAAATGGTGGAGGAGTTGGACCTTTCTGATCAAGATGTCTCCACAATTTCGGAAATGATTGAAACAGAAATTCGATCTTACATTCCAGATTGGATATCAGTTGAGTACTCTGGAGATAATGTAGGTGCTGATGTTGCAATTTCTGATAGCTCTCCTTCTGAAACAAGGAATGCTGCCTCTCCATTGTCTATTGAATCTGGTAATCTTGCATTAGAGGTTATGCCTTCAGGTCGCAAGTATTGGTCAGACTCTCCAAAGGGAATTGGTGGATGTTCTCCTATTAAACCAGGTCCTTCAAACTTGTCTTTTACCTTAGATCAAAATGTTGAATCCTCCAACACCCCCATACATGGGGACAATCTAGACCATGCTGCCATAATTAAGGGATTGGAAAGTGAGCTTTTGTTAGAGGGCGGTGATCATGATGGACGGGATGAGGATAACTCAACTACAAATATTCATGCTAGCTCTGAAGCACATCTTTTAGAAGAGAACAATTATGATGAATCAGTTGACCTTGAAATAATAGCTGAGAAACTTGAAATTTTGTTGACACAACAACAGAAGGAATTAGATGAACTAAAGAAAAAGCATAAATTAGCTATTTCAGAACTTTTGACTAAACTTGCACCTGAGTCCTATCAGAAGTCAATTGATCCAGTTATGAAGCATGATGTTGAAGATGGTAAGGAGTGGCCAATCGATGGATTGCAAAGCTATAAACTGATATCGGCATCCCTTCCTGCACTAGTTGTAGAACATTATGCTGATCGATACAAATTCCCCGGCGACCAATTAGTGAAGAATATTAACTGCAGCATCACGGAAGCAATCACAGCAACTGTGACCTATTACTGCAAAGCCCGAAAAGCAAATTGGAAGAATAACCATTAA 2013 38.9 MSQDLSLDQDLDESDPEFVEIDPTGRYGRYKEILGKGAFKRVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDLGVKAFIEKCIANVSDRLPAKDLLKDPFLQADDDHESASRHLQSKTLHAGKREQIDFDRSVDDTSVETSRDFSMHGERKDVNKIFLKLRIADSMGNYRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWISVEYSGDNVGADVAISDSSPSETRNAASPLSIESGNLALEVMPSGRKYWSDSPKGIGGCSPIKPGPSNLSFTLDQNVESSNTPIHGDNLDHAAIIKGLESELLLEGGDHDGRDEDNSTTNIHASSEAHLLEENNYDESVDLEIIAEKLEILLTQQQKELDELKKKHKLAISELLTKLAPESYQKSIDPVMKHDVEDGKEWPIDGLQSYKLISASLPALVVEHYADRYKFPGDQLVKNINCSITEAITATVTYYCKARKANWKNNH 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5021396 5026515 - CrPI670011_03g006100.1 Cre03g0610 492640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0610 670 CDD STKc_WNK 26 286 - -
Cre03g0610 670 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 575 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cre03g0610 670 Coils Coil 550 577 - -
Cre03g0610 670 Gene3D - 339 404 - -
Cre03g0610 670 MobiDBLite consensus disorder prediction 510 524 - -
Cre03g0610 670 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Cre03g0610 670 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Cre03g0610 670 MobiDBLite consensus disorder prediction 510 534 - -
Cre03g0610 670 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cre03g0610 670 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Cre03g0610 670 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0610 670 SMART serkin_6 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0610 670 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cre03g0610 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0610 670 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0610 670 FunFam Probable serine/threonine-protein kinase WNK1 12 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1958 Cre-Chr2:32971515 Cre03g0610 Cre-Chr3:5021396 1.70E-139 dispersed
Cre03g0610 Cre-Chr3:5021396 Cre05g0133 Cre-Chr5:1469645 1.50E-137 dispersed
Cre03g0610 Cre-Chr3:5021396 Cre06g1368 Cre-Chr6:7881587 1.30E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63937 PF00069 Pkinase 1.40E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0610 K08867 - csv:101206177 1047.34