Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0611 ATGGAATTCAGAAAGAGCAGAGAGAATTCGAGAGATATGGCAAAATTAGGGCAAAAGAGAGTGACAAATTCTCGGCCCAAGCCTCATCAGCAGGCTCCCGATCTGACGGATTTTATGAACGACATGTTCTTTGGGGCCGTAAACAAGGACAAGAAAGCCTATAATTTGACTGGAAATGAAGATGATGATGAAGAAGAAGAAGAAGAATCGTTTGATCGGAGCAATAGAAGTAGAAATGAGCAATTGACGGAGGAGTGGTTGGATGAGGCACGTCGGTTGGTGGCTTCTTCGCCCTCGCGGTGTAATTCGCCGGCTCGACTTGCTGGATCGCCGAGGTTTGCGGCGGCCAATGGCAGATCTCCGGCGTCGATTATTGATCGGAGAGATCCACTCTCAAGGTCCGCCAGAAGGCACAGAGCTGTGGACAACTTCAGTGGTGAGATCCTCTCCAAAGTCGTCCGACACAGCCGCAACAAATCGGAATCCTTTTCAACCTCCTCCACGGTGGAGGAGCCGATAAATCCTGCTTCGGCCGTTCAAAAATGGATCTCCAACATCCTCAAACCACCCTCCAATCCCGTCATTTCCATCCCCGATCCTCCTCCTCCTTCCACTCCTCGCAAATCTCGATTCCACACCGATCTTCCCCCTTCTCGCCTCCCAATTCCTCCCTCAGATGCCCTTCTTTCTCCGCCTAAAACCCTAACTGATCTGCCGCCTAGACGAACGGTCTCATCGCCGGCTTTTTCACTTCAGACGATTAGACCCAAATCCAATCTAAATGGGTTTTCGAGGGGCGATTCTGGAGATTTGGAGTTTGGTCTTAATGGGTTTCTCAAAGAACAGCGGAGCAAGATTCAACAAATCTCAAACGGGGAGCTCGATGCCGAAGTTAAAATCATTCTCTCTGGGCCTTCAAATAGCACTAGTTCAATGGTGGCAGCAATTTGCTATGCTTGGCTACTTGAGAACAAAATGAGGCAGAGTAGTGTGGAGACCGGTCGAGAGTGTCTCGTGGTTCCTGTGATGAATATGCAGAGGGGAAAGATGTGGAACCAACGGCAGGTTGCTTGGCTCTTTTATCACCTTGGACTTGATGCTTCCTCAATCCTTTTTACTGATGAGGTGGACTTAGAAAATCTGATGATAGCTGGTCAAACTAGCATCCTTGTGGTAGGGCAAGATGTTCTTAAGATGAGTGATGGGGTTGGCTCTCAGTGCACCATTCTTACAGATAACTATTGTGAAGATGCCTATCATTTACTTCAAACCCCATTGTTGAAGAATCTTTTGCTTGCAGGAATCCTGTTGGACACGAAAAATCTCGATTCATCTTCTCAATCATCCATGACAAGAGATGCAGAGGCGGTTCAGTTGCTATTGGTTGGCTCAGGCCCAAATTCTAAGAATGGACTTTATGATCAACTGATGCGTGTTCAAAAGGAGAGTGCATTTTTGGATGCCTTGATACAAAATTATGGAAAGCCTCCCAATGATGGTAGCAACAATGGTGTGGGGCGTTCGGAGCGTATCAAGGAGAGGAATCAAGCATCAATCTCACCCAATGGTGATGCAATTAATCAACAAAAGATATCTAATGATTTTGGAACTGCCAAAACTGGCAGGGTTTCTCCAAAATCCGGCATTGTAGTTGAGGATTCTTCTGAATAG 1671 46.92 MEFRKSRENSRDMAKLGQKRVTNSRPKPHQQAPDLTDFMNDMFFGAVNKDKKAYNLTGNEDDDEEEEEESFDRSNRSRNEQLTEEWLDEARRLVASSPSRCNSPARLAGSPRFAAANGRSPASIIDRRDPLSRSARRHRAVDNFSGEILSKVVRHSRNKSESFSTSSTVEEPINPASAVQKWISNILKPPSNPVISIPDPPPPSTPRKSRFHTDLPPSRLPIPPSDALLSPPKTLTDLPPRRTVSSPAFSLQTIRPKSNLNGFSRGDSGDLEFGLNGFLKEQRSKIQQISNGELDAEVKIILSGPSNSTSSMVAAICYAWLLENKMRQSSVETGRECLVVPVMNMQRGKMWNQRQVAWLFYHLGLDASSILFTDEVDLENLMIAGQTSILVVGQDVLKMSDGVGSQCTILTDNYCEDAYHLLQTPLLKNLLLAGILLDTKNLDSSSQSSMTRDAEAVQLLLVGSGPNSKNGLYDQLMRVQKESAFLDALIQNYGKPPNDGSNNGVGRSERIKERNQASISPNGDAINQQKISNDFGTAKTGRVSPKSGIVVEDSSE 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5033540 5039012 - CrPI670011_03g006110.1 Cre03g0611 492641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0611 556 PANTHER BNIP - RELATED 231 499 - GO:0004309(PANTHER)|GO:0005737(PANTHER)
Cre03g0611 556 MobiDBLite consensus disorder prediction 513 556 - -
Cre03g0611 556 MobiDBLite consensus disorder prediction 1 15 - -
Cre03g0611 556 MobiDBLite consensus disorder prediction 1 81 - -
Cre03g0611 556 MobiDBLite consensus disorder prediction 95 125 - -
Cre03g0611 556 MobiDBLite consensus disorder prediction 515 540 - -
Cre03g0611 556 MobiDBLite consensus disorder prediction 190 244 - -
Cre03g0611 556 MobiDBLite consensus disorder prediction 193 207 - -
Cre03g0611 556 Gene3D - 399 481 - -
Cre03g0611 556 Gene3D - 272 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0611 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1303 Cre-Chr2:15615412 Cre03g0611 Cre-Chr3:5033540 1.00E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g840 Blo04g00714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0935 Cone16ag0068 . . Lsi02g00420 . Chy12g01234 Cme12g01657 . . . Bda14g00792 . Bpe15g00657 . . . . . . . . Car18g00189 Cpe09g00998 . Bhi08g01668 Tan05g1957 . Lac10g0498 . . . Cla03g00291 Cam03g0309 Cec03g0304 Cco03g0317 Clacu03g0310 Cmu03g0920 Cre03g0611 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004587 2 3 1 0 1 1 1 1 1 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 2 1 1 4 1 39