Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0634 ATGGCACCGCCTACAGTCCCTCTCTCTCTCCTCTCCCTCTTCCTCTTCTCCGTCTCTCTATCCGCCGCTCTCTCCGCTGCCCCTGCCGCCGTTCCCAACCCTGAACTCGTCGTACAAGAAGTACACAGAAGCATAATCAATGCGACGAAGAGGAGGAATTTAGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATCCCAATTGGGAGAAAAATCGTCAGAGACTAGCCGACTGTGGGATTGGATTCGGCAAAAACGCCATTGGCGGTCGCGACGGCCAAATCTACGTCGTCACTGACTCCGGCGACGATGATCCAGTTAACCCTAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGATGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTGATTCGATTGAAAGAAGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGCGTCCATATCGCCGGTGGGCCTTGCATTACCATTCAGTACGTGACAAACATTATAATCCATGGTCTCAACATTCACGACTGTAAGCCAGGGGGAAACACGGACGTGAGAGATTCCCCTCGACATTTCGGATTCAGAACCATATCGGACGGGGACGGCGTTTCGATCTTCGGCGGCAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGTAACGATGGATTAATCGACGCCATTCATGGGTCTACTGCAATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAACGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACTATCAACAGTCAAGGGAACAGATTTGTTGCACCGGATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCGGAGAGTGAGTGGAAGAATTGGCATTGGAGATCAGAAGGAGATCTGATGCTAAACGGTGCATTTTTCACTGCCTCCGGCGCCGGAGCGTCGTCAAGTTACGCTAGAGCATCGAGTTTAGGGGCGAGACCGTCGTCGCTCGTCGGTACAATTACGACAAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1236 50.0 MAPPTVPLSLLSLFLFSVSLSAALSAAPAAVPNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5246066 5248094 - CrPI670011_03g006340.1 Cre03g0634 492664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0634 411 Gene3D - 62 404 IPR012334 -
Cre03g0634 411 Pfam Pectate lyase 147 328 IPR002022 -
Cre03g0634 411 PANTHER PECTATE LYASE 18-RELATED 21 408 IPR045032 GO:0030570(InterPro)
Cre03g0634 411 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
Cre03g0634 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cre03g0634 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Cre03g0634 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cre03g0634 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cre03g0634 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cre03g0634 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cre03g0634 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cre03g0634 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cre03g0634 411 SMART amb_all 137 334 IPR002022 -
Cre03g0634 411 FunFam Pectate lyase 62 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0510 Cre-Chr1:4395893 Cre03g0634 Cre-Chr3:5246066 6.80E-186 dispersed
Cre03g0634 Cre-Chr3:5246066 Cre08g1690 Cre-Chr8:29305832 8.50E-189 dispersed
Cre03g0634 Cre-Chr3:5246066 Cre05g0447 Cre-Chr5:4069326 4.40E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0634 K01728 - csv:101209736 778.859