Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0635 ATGCCTTCAGCAAAGTTCAGACAAAGAACTTACGGTTCGCGCTCCAAGAGCTGCGAGTGCGAGCTTGAAGCATCCATGGAGGAAGTCGATGAGAAACAATGTATCAGAATTCTTCCTCACAAGCTCGTTCTCCAGAAAAAAGAGCCGGCTCTTCAATGGCTCATCGGATCGCCGTTTCTGTCGCCTTTGACTATCGTCTCCACTCTCAGATGCATCCATCATTCGTCTCCACCTGAATCTGTCTCGCCTGATTTCACCAAGGAAGCAGACGAGCTGCGGACGTTATTATTGAAGGGTTTTTGTATTATTGGAGCATTGGTTGTTGGGAATTTCAACGTCGAAGAACATGCGAGTAAGGCAGTTGATGCGGCGCGGAGATTGAGGCAGCTTATATCTCACGGTGAAAAGACTGACAAGCAAATATTGATTGGAGCGGTTGCTGATATCAATTCTACAGATATTCACTTTTTTGTCTCCCAGTCTGAAAATGGCTCGAGCTTGGATTCTGTTTCTTCGGTTATGTACGAAAATAATGCCGAAAAATATATTTGGGAGAGAGGTTGTCTGATCCGGTGCGAACTACCGATTAGTGTACCGCTCTATATTCCTCTCAACAGTCCATCAGATGTTGAAAAGACGTACATACATGCCACAGAATCTGTTATTTCCAAGTTGAGAGACCCACAGGTGGTATATATAGTGGAACCAGTATGCAAAAACTCCACAGAAGATCCTTGTCCAGTCATTTTACGTGGTTCACAAATGGATTTCCAAATTAATCTCTCAAAGTTTAGGCAATTGAATGATGGCAGCCAAAATGCTGATGGAATGTCTTTGCCATGTGCAAACTTTTGTTTAAAAAGTAAAACTGATTCCTCAACGTTTTGTTCACAGAATGCAGATATAATCCAAGTAAGTGTTCTTCTAAATAGCTCGGCAAAGTCTCAAAAATCTAGTGCACCAGTTGTAGAGTACTTTCCAGCTGTGGACAAGACCAGGCTTTTGGTTGTCGACTTGAAGGCAGAAGTTCTCTGTTATGCTGCCAAGTTTCTTCCATTGACTTATGCTGTTTCAACCTTGATCATTCCGGGTTTAGTTGACCAGTTAAACTCGATGAAGAATGCAATATTACCCAACCTTGTAAACCAACTGCCTCATCTAGTGCCATATCATTTTTGCCCTCTTGGATTTTTGCATCCAATAACTGTTATCTATGAACTCACTTATGGGGAGACTGAAATGAAGCAAGTGGAACTAAGGAAAGCCCTACACTTAAGATTAGGGTTACCTTTTGATCGTCCTGTGCTAAGAATTGCTAGTGCATTGGATTTCTCTGGCAGGAAGGACAATTTGCCACGAAAGGGTTCCTTTTTGCTCAAAGATGTTCATATTGGAATTCCAAGCAGCGGTGTTTCAGGAGGCCAAATGTCTCTGGTTCAGGGGTCGTATGAGTACCATCATTATCTTCAAGAAGGTTTCAATGACTCGGGCTGGGGTTGTGCTTATCGGTCTTTGCAAACTATCATTTCATGGTTCAGACTCCAACATTATACATCCATAGATGTTCCTTCACATAGGGAAATACAAGAAGCACTAGTGGAGATTGGTGACAAGGATGATTCATTTATTGGGTCACGTGAATGGATTGGTGCCATCGAATTGAGCTTTGTTTTAGACAAATTGCTCGGTGTGAGTTGCAAAATCATAAATGTCAGATCTGGGGCTGAACTTCCGGAGAAATGTAGAGAATTGGCTGCACACTTCGAGAATCAAGGAACTCCTATAATGATTGGTGGTGGTGTTCTTGCATACACACTCTTGGGAGTTGATTACAATGAAGCAAGTGGAGATTGTGGGTTTTTAATATTGGATCCTCACTATACAGGAAGTGATGATGTCAAGAAAATTAAGCTCGTCTGCTGCTTATGTGCAGCATCCCCAAGTCCCACCAGCCAGTCTCCATCTCCGATTTTCCTCCAATTTCTCGAAGAAGAAGAGGAGGAAGCAGAAGAAGTTAAGGAAAGTTATGGAGGAAACAAGACGGAAGAGGATTGGAACGACCCATTATTCAGATTTTTCAAATCCCGGACTTCAACAACGCAAGACCCACTACGGGAAAGCAAATTGTACCTTCAGAAGAATCGCCGTTCGTCGTGGCATCTTGCCTCCGATGTTGAATTTTCCGATGAAGCTGAAACTGCACTCGTGGAAGACAAGGGAAAATTGGGTTCTGTGAGTCGGAATTCTAGGGTCTTGCCGGATGGTCTCGTCGGAGACATTGTGCGAATTGCGAGGAATTTGCCGCAGAATACGACTTTGGGGGAGACTTTGGGAGATTTTGAAGGAAGAATTAGTGAGAAAGAATGTCTGGAGGTGCTTCGCTTGTTGGGTGAGGAGAATCTTGTGGTATGTTGCTTGTACTTCTTTGAATGGATGGGTTTGCAGGAGACTTCGCTTGTTACACCTCGTGCTTATTCTCTTCTCTTTCCATTGTTGGGAAGAGCTGGAATGGGAGAAAAAATTATGGTGTTATTCAAGAACCTTCCACTCAAGAAGGAATTTCAGGATGTTCATGTATATAATTCTGCAATGTCTGGGCTTATGGTCTGCAAGAGGTACGATGATGCTTGCAAGGTGTACGAGGCCATGGAAACAAATAATGTCAATCCAGATCATGTGACATGTTCTATAATGATTACAATCATGAGAAAAATTGGCCGGAGTGCAAAGGATTCGTGGGATTACTTTGAGAAAATGAACAAAAAAGGAGTAAAATGGAGTCCAGAAGTTTTAGGTGCTTTGATTAAATCGTTTTGCGACGAGGGGCTGAAGAGTCAAGCACTTATCATCCAATTGGAAATGGAGAAGAAAGGGCTTGCTTTGAATGCGATCATGTATAATACAATCATGGATGCTTTTAGTAAATCGAATCAAATCGAGGAAGCTGAAGGTATCTTTGCTGAAATGAAATCTAAAGGAGTGAAACCAACGAGTGGAAGTTTTAACATCTTGATGGATGCATACAGTAGGAGGATGCAACCTGAGATTGTTGAGAAGCTTCTGGTTGAAATGAAGGACATGGGATTGGAGCCTAATGTGAAGTCATACACTTGCTTGATTAGTGCTTATGGGAGGCAGAAGAAAATGAGTGACATGGCTGCAGATGCATTTTTGAGAATGAAAAAGAACGGTATAAGGCCAACCTCTCATTCATATACAGCCCTGATTCACGCTTATTCAGTTAGCGGTTGGCACGAGAAAGCTTACTCGACTTTCGAGAACATGCTGCAAGAAGGTTTAAAGCCATCCATTGAAACTTACACGACTCTTCTCGATGCATTTAGGCGTGCCGGTGATACTGTGGCGTTGACGAAAATATGGAAGTTAATGATTAGAGAAAAGATAGTAGGGACAAGAGTAACATTCAACATACTGCTAGATGGGTTTGCAAAACAGGGTCATTATGTTGAAGCTAGAGATGTGATCTCTGAGTTTGATAAGATTGGGTTACAACCAACTGTTATGACATACAACATGTTGATGAATGCATATGCTAGGGGAGGTCAACATTTAAAGATGCCACAGCTGCTGCAAGAGATGGCTGCTCGGGAACTAAAACCCGACTCCATTACTTATTCGACCATGATTTACGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTTTATCACAAGAAGATGGTAAAAAGTGGACAAGTGCCTGATGTGAAGTCATACCAGAAACTTAGATCAATCTTGGATGTAAAACTTGCTACAAAGAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGAATGGTGAAAGCTAAGAAGAAGGGCAAGAAAGATGAGTTTTGGAAGAACAAGAGAAAGCATGAAGCTTTGGAGTTCCTTGAGAGCCCAAGAACCATGGTTGGGGTTGTGCTTACCGCTCTTTGCAAACTATCATTTCATGGTGACTCCAACATAACATCCATAGATGTTACTTCACATAGGTTTAGCGGGTGGCACGAGAAAGCTAACTCGACATTTCAAGAACATGTTGCACGAAGGCTTAAAGCCTTCCATTGA 4089 42.21 MPSAKFRQRTYGSRSKSCECELEASMEEVDEKQCIRILPHKLVLQKKEPALQWLIGSPFLSPLTIVSTLRCIHHSSPPESVSPDFTKEADELRTLLLKGFCIIGALVVGNFNVEEHASKAVDAARRLRQLISHGEKTDKQILIGAVADINSTDIHFFVSQSENGSSLDSVSSVMYENNAEKYIWERGCLIRCELPISVPLYIPLNSPSDVEKTYIHATESVISKLRDPQVVYIVEPVCKNSTEDPCPVILRGSQMDFQINLSKFRQLNDGSQNADGMSLPCANFCLKSKTDSSTFCSQNADIIQVSVLLNSSAKSQKSSAPVVEYFPAVDKTRLLVVDLKAEVLCYAAKFLPLTYAVSTLIIPGLVDQLNSMKNAILPNLVNQLPHLVPYHFCPLGFLHPITVIYELTYGETEMKQVELRKALHLRLGLPFDRPVLRIASALDFSGRKDNLPRKGSFLLKDVHIGIPSSGVSGGQMSLVQGSYEYHHYLQEGFNDSGWGCAYRSLQTIISWFRLQHYTSIDVPSHREIQEALVEIGDKDDSFIGSREWIGAIELSFVLDKLLGVSCKIINVRSGAELPEKCRELAAHFENQGTPIMIGGGVLAYTLLGVDYNEASGDCGFLILDPHYTGSDDVKKIKLVCCLCAASPSPTSQSPSPIFLQFLEEEEEEAEEVKESYGGNKTEEDWNDPLFRFFKSRTSTTQDPLRESKLYLQKNRRSSWHLASDVEFSDEAETALVEDKGKLGSVSRNSRVLPDGLVGDIVRIARNLPQNTTLGETLGDFEGRISEKECLEVLRLLGEENLVVCCLYFFEWMGLQETSLVTPRAYSLLFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAMSGLMVCKRYDDACKVYEAMETNNVNPDHVTCSIMITIMRKIGRSAKDSWDYFEKMNKKGVKWSPEVLGALIKSFCDEGLKSQALIIQLEMEKKGLALNAIMYNTIMDAFSKSNQIEEAEGIFAEMKSKGVKPTSGSFNILMDAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSTFENMLQEGLKPSIETYTTLLDAFRRAGDTVALTKIWKLMIREKIVGTRVTFNILLDGFAKQGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKMPQLLQEMAARELKPDSITYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLRSILDVKLATKNRKDKSAILGIINSKMGMVKAKKKGKKDEFWKNKRKHEALEFLESPRTMVGVVLTALCKLSFHGDSNITSIDVTSHRFSGWHEKANSTFQEHVARRLKAFH 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5264544 5278356 + CrPI670011_03g006350.1 Cre03g0635 492665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0635 1362 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1208 1242 IPR002885 -
Cre03g0635 1362 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 962 996 IPR002885 -
Cre03g0635 1362 SUPERFAMILY Cysteine proteinases 493 631 IPR038765 -
Cre03g0635 1362 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1173 1207 IPR002885 -
Cre03g0635 1362 Pfam Peptidase family C78 475 635 IPR012462 -
Cre03g0635 1362 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 856 890 IPR002885 -
Cre03g0635 1362 Gene3D Tetratricopeptide repeat domain 908 1018 IPR011990 GO:0005515(InterPro)
Cre03g0635 1362 Gene3D Tetratricopeptide repeat domain 1128 1307 IPR011990 GO:0005515(InterPro)
Cre03g0635 1362 Pfam Ubiquitin-fold modifier 1 specific protease 2, N-terminal 298 445 IPR049387 -
Cre03g0635 1362 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 997 1031 IPR002885 -
Cre03g0635 1362 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1138 1172 IPR002885 -
Cre03g0635 1362 Pfam PPR repeat family 962 1009 IPR002885 -
Cre03g0635 1362 Pfam PPR repeat family 856 900 IPR002885 -
Cre03g0635 1362 Pfam PPR repeat family 1172 1220 IPR002885 -
Cre03g0635 1362 Gene3D Tetratricopeptide repeat domain 756 907 IPR011990 GO:0005515(InterPro)
Cre03g0635 1362 Gene3D Tetratricopeptide repeat domain 1025 1127 IPR011990 GO:0005515(InterPro)
Cre03g0635 1362 PANTHER UFM1-SPECIFIC PROTEASE 2 164 637 IPR051250 -
Cre03g0635 1362 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1068 1102 IPR002885 -
Cre03g0635 1362 Pfam Pentatricopeptide repeat domain 1019 1079 IPR002885 -
Cre03g0635 1362 Pfam Pentatricopeptide repeat domain 1092 1149 IPR002885 -
Cre03g0635 1362 Coils Coil 659 682 - -
Cre03g0635 1362 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1032 1067 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 1140 1167 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 1210 1244 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 1000 1033 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 964 997 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 1035 1068 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 1070 1103 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 859 891 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 1176 1209 IPR002885 -
Cre03g0635 1362 NCBIfam pentatricopeptide repeat 1106 1136 IPR002885 -
Cre03g0635 1362 Gene3D - 457 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0635 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48