Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g0637 | ATGCCTCTCAAGACCGAACATGGAGCATCCGACAGCTCCCTCGATGAGCACTCCAAGACGGTCCATTCTTCTAAAGTCGTCGTTCTTGCTGACCTCAACGTTGATCCTCCAGAAATGGATGACGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCCAGGTTATCTATGGATGAGAGCAATCAAGACAAAACTGTGGCAATTTGCAAGGATACTAATTCAATGGAAGTTGAAGGTAGACGTTTAAGCAAAATTGGAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGTAGATGGTGATCAACCTGGTCCAGGTGTTTCAACTTCACGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTCATGTACCAGAGGTTGGGCCAGCCACAAAAGGCAGTTTTAGCATATGAGAAGGCAGAGGAGATCCTACTCCAAAGTGATGTTGAGATTCAGAGACCAGAGTTGCTCTCATTGGTCCAAATTCATCATGCACAGTGTCTCCTCCTAGAAAGTGCAGGGGATAATAGTTCAAACAAAGAACTTGAACAGGAGGAGCTTGATGAGATTTTTTCTAAACTTGAGCATTCAATGCAATCTGATGTTAGACAGGCAGCTGTGTGGAATACCCTAGGCTTGTTACTTCTTACAACTGGTCGAGTGAAGAGTGCTATTTCAGTGTTGTCATCGCTGTTGGCCATTGTTCCTAACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTGGAAATATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACGGATCAAAATCATCCTGCTGCCCTCATCAACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCCGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGCATGAATGTTGCAAAGGAATGTTTGCTAGCGACCCTGAAGGTAGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGCGTATTTTGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAATTGCATGTCTATGAGATATGCCGTTGCTATGCACCGACTTAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAACTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGATGGAGATGGCTCGACAATCGATCATTCTATAGCATGGGCTGGGCTTTCCATGGTTCACAAGACTCAACATGAAATTGCTGCAGGATTTCGTACAGATCAGAGTGATCTGAGAGAAAAGGAAGAACACGCTGTCTACAGTTTAAATCAGGCAATAGCTGAGAACCCAGATGATGCTGTTCAGTGGCATCAATTCGGCCTCCATAGCCTCTGTACGCGAGAATTTAAAACATCACAAAGATACCTCAAAGCTGCAATTGCCCGCGTCAAGAACTGTAGTTTTGCATGGTCAAACCTAGGTATCTCGTTGCAACTCTCAGACAACCCGACACAGGCTGAAGAAGTATACAAGAAAGCTTTGTCATTGGTGGCCACAGAACAAGCACATACTGTATTTTGTAACCTCGGAAATCTATATCGACAACAAAAGCAGTACGAACGTGCCAAAGCTATGTTCTCAAAGTCTCTGGAACTGCAACCCGGTTATGCACCTGCCTTTAACAATCTAGGATTAGTGTTTATTGCGGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCGGATCCGTTACTCGATTCAGCTAAGTCGAACTTGATTAAAACAGTAGGCATATCTCGACTATTGAAAAGCTTCGGCAAGACCAGAAGCTCCGGCGAAGTATATACGGCCATTGGAGGTCGGCGAAGGATGAAACGCTTCTTTAAACCTATAGAAAAGGAAGGGTCTTCGAAGAAAGCGGCTCTCTCACCTTCGCTGAAAGATGATGATGATTCGGAAGCATCAGCGCCGGACAAGAAAGAGCCTCGTAAATTTGTAACTTGGAATGCAAATAGTTTACTTCTCCGAGTTAAAAACGACTGGCCGGAGTTCACCAAGTTTGTCACCAACCTTGATCCGGATGTTATTGCCATACAAGAAGTAAGAATTCCTGCAGCAGGTTCAAAAGGTGCACCTAAAAACCAAGGAGAGTTGAAAGATGACACAAGCACATCACGGGAAGAGAAGCAGATGTTGATGCGTGCTCTTTCCAGTCCACCCTTTGCAAATTATCGTGTTTGGTGGTCTCTTTCAGATTCCAAGTATGCTGGAACTGCATTGTTTATAAAAAAGTGTTCTCCACCAAAAAATGTTTTCTTCAACCTAGACAGAATAGCTTCAAAGCATGAAGTGGACGGTCGTGTAATTTTAGCTGAATTCGAGACATTTCGTTTATTGAACACATATTCACCAAATAATGGATGGAAGGAAGAGGAGAACTCTTTTAAAAGGAGAAGGAAATGGGACAAGAGAATGTTGGAGTTTGTTATCCAATCTTCTGATAAGCCTCTTATATGGTGTGGTGACCTGAATGTTAGTCATGAAGAGATTGATGTGAGTCATCCAGATTTTTTCAGCGCAGCAAAACTTAATGGGTACATACCCCCAAATAAGGAGGATTGTGGGCAGCCTGGATTTACCTTGGCTGAAAGGAAGCGCTTCAATTCTATATTGAAGGAGGGAAAGCTGATAGATGCATATAGATTCCTTCACGAGGAGAAAGACATGGAGCGTGGCTTTTCTTGGTCTGGGCACCCCATTGGAAAGTATCGAGGCAAAAGGATGAGAATTGACTATTTCTTAGTTTCCGAGAGTCTCGTAGGTAGGATTGTTTCATGTGAGATGCATGGGCAAGGGATTGAATTACAAGGTTTCTACGGAAGCGATCATTGCCCCGTTTCTCTTGAGCTGTCAGAAGCCAGTTCTTGCCCTGAGTCTCAAAAAAACTAA | 3054 | 43.65 | MPLKTEHGASDSSLDEHSKTVHSSKVVVLADLNVDPPEMDDDSSVHVSASTISRLSMDESNQDKTVAICKDTNSMEVEGRRLSKIGKCRSRNNKVEYSLDSAADVDGDQPGPGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIQRPELLSLVQIHHAQCLLLESAGDNSSNKELEQEELDEIFSKLEHSMQSDVRQAAVWNTLGLLLLTTGRVKSAISVLSSLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILTDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLATLKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGSTIDHSIAWAGLSMVHKTQHEIAAGFRTDQSDLREKEEHAVYSLNQAIAENPDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARVKNCSFAWSNLGISLQLSDNPTQAEEVYKKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSAKSNLIKTVGISRLLKSFGKTRSSGEVYTAIGGRRRMKRFFKPIEKEGSSKKAALSPSLKDDDDSEASAPDKKEPRKFVTWNANSLLLRVKNDWPEFTKFVTNLDPDVIAIQEVRIPAAGSKGAPKNQGELKDDTSTSREEKQMLMRALSSPPFANYRVWWSLSDSKYAGTALFIKKCSPPKNVFFNLDRIASKHEVDGRVILAEFETFRLLNTYSPNNGWKEEENSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAAKLNGYIPPNKEDCGQPGFTLAERKRFNSILKEGKLIDAYRFLHEEKDMERGFSWSGHPIGKYRGKRMRIDYFLVSESLVGRIVSCEMHGQGIELQGFYGSDHCPVSLELSEASSCPESQKN | 1017 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5287102 | 5303651 | + | CrPI670011_03g006370.1 | Cre03g0637 | 492667 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g0637 | 1017 | ProSiteProfiles | TPR repeat profile. | 587 | 620 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | ProSiteProfiles | TPR repeat profile. | 354 | 387 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | Pfam | Endonuclease/Exonuclease/phosphatase family | 701 | 998 | IPR005135 | GO:0003824(InterPro) | |
| Cre03g0637 | 1017 | ProSiteProfiles | TPR repeat region circular profile. | 553 | 584 | - | - | |
| Cre03g0637 | 1017 | FunFam | DNA-(apurinic or apyrimidinic site) lyase | 670 | 1007 | - | - | |
| Cre03g0637 | 1017 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cre03g0637 | 1017 | NCBIfam | exodeoxyribonuclease III | 699 | 1005 | IPR004808 | GO:0004518(InterPro)|GO:0006281(InterPro) | |
| Cre03g0637 | 1017 | SMART | tpr_5 | 587 | 620 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | SMART | tpr_5 | 517 | 550 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | SMART | tpr_5 | 553 | 586 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | SMART | tpr_5 | 140 | 173 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | SMART | tpr_5 | 354 | 387 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | SMART | tpr_5 | 231 | 264 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | SMART | tpr_5 | 265 | 298 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | MobiDBLite | consensus disorder prediction | 101 | 122 | - | - | |
| Cre03g0637 | 1017 | MobiDBLite | consensus disorder prediction | 749 | 763 | - | - | |
| Cre03g0637 | 1017 | CDD | Ape1-like_AP-endo | 699 | 1005 | - | - | |
| Cre03g0637 | 1017 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED | 27 | 630 | - | - | |
| Cre03g0637 | 1017 | Pfam | Tetratricopeptide repeat | 554 | 616 | - | - | |
| Cre03g0637 | 1017 | Gene3D | Endonuclease/exonuclease/phosphatase | 663 | 1007 | IPR036691 | - | |
| Cre03g0637 | 1017 | ProSiteProfiles | TPR repeat profile. | 231 | 264 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | ProSiteProfiles | TPR repeat profile. | 553 | 586 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | MobiDBLite | consensus disorder prediction | 678 | 696 | - | - | |
| Cre03g0637 | 1017 | Gene3D | Tetratricopeptide repeat domain | 201 | 313 | IPR011990 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | Pfam | Tetratricopeptide repeat | 354 | 387 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | Pfam | Tetratricopeptide repeat | 140 | 169 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | MobiDBLite | consensus disorder prediction | 742 | 765 | - | - | |
| Cre03g0637 | 1017 | Gene3D | Tetratricopeptide repeat domain | 438 | 653 | IPR011990 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | SUPERFAMILY | DNase I-like | 699 | 1005 | IPR036691 | - | |
| Cre03g0637 | 1017 | ProSiteProfiles | TPR repeat profile. | 140 | 173 | IPR019734 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | ProSiteProfiles | AP endonucleases family 1 profile. | 698 | 1007 | IPR004808 | GO:0004518(InterPro)|GO:0006281(InterPro) | |
| Cre03g0637 | 1017 | Gene3D | Tetratricopeptide repeat domain | 335 | 424 | IPR011990 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | MobiDBLite | consensus disorder prediction | 668 | 696 | - | - | |
| Cre03g0637 | 1017 | SUPERFAMILY | TPR-like | 137 | 390 | IPR011990 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | ProSiteProfiles | TPR repeat region circular profile. | 587 | 618 | - | - | |
| Cre03g0637 | 1017 | Gene3D | Tetratricopeptide repeat domain | 127 | 184 | IPR011990 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | SUPERFAMILY | TPR-like | 464 | 618 | IPR011990 | GO:0005515(InterPro) | |
| Cre03g0637 | 1017 | Pfam | Tetratricopeptide repeat | 242 | 301 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g0637 | - | - | - | - | 0.0 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g891 | Blo04g00709 | . | . | . | . | . | . | . | Cmo13g00807 | . | . | . | . | . | . | Cpe20g00195 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone2ag0948 | . | . | . | Lsi02g00463 | . | Chy12g01207 | Cme12g01628 | . | . | . | . | . | Bpe15g00664 | Bma03g00757 | . | . | . | . | Cma13g00776 | . | Car13g00622 | . | . | . | Bhi08g01692 | Tan05g2896 | . | Lac10g0535 | . | . | . | Cla03g00320 | Cam03g0336 | Cec03g0328 | Cco03g0342 | Clacu03g0338 | Cmu03g0944 | Cre03g0637 | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009614 | 2 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 32 |