Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0638 ATGGCAGCAACAGCCATGGCTGCGGAGCCGACGCAAGAGGTACTTTCTTGGCTCAAAACCCTACCGTTGGCTCCTGAATATCATCCGACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTACCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTTAATAAGTCGCTTGCAGCTCGTGCCCCCTGTTCTGGCTCGACTAATTCCAAGTCTCCGCCTACATTCACAACTCGACAACAGCAGATCGGGTTTTGCCCGCGGAAAACACGACCTGTTCAGAAATCAGTGTGGCAGAGCGGTGAGTACTATACATTTCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGCTATTTGAAGAAATGTGCCAAGAAAGGAGGGCTTTCGTCTTTGGAAATCGAGACGCTCTATTGGAGGGCCACTTTGGACAAGCCCTTTTCGGTGGAATATGCAAACGATATGCCTGGTTCAGCTTTTGTGCCGGTAAGTGCAAAAATTTTTAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTGTTGAGGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTGTATGTTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTAGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACTTGGTATGGTGTACCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCCCTTGTAACTTTTGCTGTTCTTGGTGAGAAGACCACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCCATCAATTATCCTCCAATGGTCTCTCATTATCAGTTGCTATATGATCTTGCTTTAAGTTCCAGAGCACCTATGTGCACTGGTGCTGAACCAAGAAGTTCACGACTGAAAGATAAAAGGAGGAGTGAAGGGGAAACGGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACACCCTGCTGGACATTCTTGGAAGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCGATTTATTCCAGACTGCGTGTTGGATCCCACTTGAGAGCAAAATCTAGATTTCCTGCTGGTGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTTGCACTAGAAAATAGTCCGGGAATTAATCGAGTGAAAGGTTTCTATTCAGCTAACGGGCTATATTCTACTCTGTCTGAAAGTAGCACGGACAATTTATGTGCTTCAAGTTCAAGGTCTTTGAATGCCAACCATGAACGTGGTGGTAATGTTCAAAGTGATGGATTATCAGATCAAAGACTCTTTTCTTGTGTCACATGTGGTATTTTAAGCTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTCGTTGGTTCTGGGATAACCAGTGAAGGGATTGCTACTAGAGATGGGCATGCAGTTAGCTCTAGGCAGAATAGTAACAGGGGAAAAAGAGATAAATGTGTCTCGGATGGTTTGTATGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTACAGTAGCAGATGAAAGTTACAAAGCTAATTTGAATACTGAAAAACGGAATGAGACTTCTGCCCTTGGAATGCTTGCATTGACTTATGGACATTCTTCTGATTCTGAGGAGGACCATGCTGAAGCAGATGCTGCTTTAAATGCAGATGATGATGCTAAACTAATGATTTGTTCTTCAGAAGACCAATATCAGTTTGAGAATTCTGGCCTTTCTTCTGGTGAATATTGCAAGAATACTGCAATTTCGAATAACGATCCCTCGTCTTATGGTGTTAACGCTGCAGATCAAATGCAATTTCAAGTCAATGACTATGAAGAATTTGGGCGAGCTAGATCTGATTCCAAAGATTCGTTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACAAAGAAAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAATGTTAGATCTTCCTTGGATGCTGATACTGATAAACCAGTGTTTGACAAGTCCACTGAACCAGTGGAGATTGAGAATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCGAGATTGCATGTATTTTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGTGAACATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAACTGCTGGCACAAGAATTAAATATGAACCATCTGTGGACTGATACAATGTTCAGAGGTGCCACCCAAGATGAAGAAAAGAGGATTCAGTTAGCTTTAGATAGCGAGGAAGCAACTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAACCTATTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCTAACTCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGGACTGGCAAGCTGAAAAGAGTAGTTGCAGGGAAATGGTGCGGGAAAGTCTGGATGTCAAATCAAGTTCATCCTTTGCTAGCAAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTCTTGGACAATGTCAGATGAGAAGATTGATAGGAAACCAGAAAATATCCAGAAAAACGAGACTGTTATGGTAAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGCGGAACAACTAAGAAAGCCAAACCTATAGAGTCAGAGGACATGGTTTCAGATGCTTCGGTTGAAGATTGTATCCATCAGCATCATAGTATTCTACGAAACAAGCGATCCAAATTTGTTGAGAGCAATGATGCTATATCAGATGATTCTGTGGAGGATGATTCTTGTAGAAAACATGGAGTTCCCATCAGCAAGGGAGTGACATATTGTGGGATAGATGATACCGGTTCAGATGATTCTCTTGGAGATTGTCATAATCTGCGCAGAGGGTTCTCTGGATTCAAGCTGCCTAAGTGGGGTGAGATAGAACCTGCACTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAAGACTGAAGAATACATTGAGAGACAAGATGCACTTTCAGATGAGTGTCTGGAGAGTGGTTCTCTTAAGCAATATAGAAGGATTCCGAGAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGCCATTTCACATGATATACGGGATGATAGTTTTCTTTGGCATCATCAAAGGCCTTCCAGAAGCAAGAAGGCCAAATCTATCGAGAGTGAAGATGCAGTTTCAGAGGACTCCCTAGAAAATAATTCTCATCAGCATAGAAGTATGCCTCAAAGAAAACCAGTCAAACGCACTGCGAGGGAAGATGCATTTTCAGATGGTCCAGATGAAGATGATAATTCTCTTCTGCAGCATCGGAATATTAGAAGAAATGTGCAATTCAAATACAGTGAGAGAGAAATTACATCAGATGACCAGCTTGATGATAGTGCTAATCAAAGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTCAAGACAGAGACAATTTCACAAATGAAACAAGAGATCCTGCGACCTGCAAGGCGGGGAGCCTCTCAGACTTTGAAAGAAGAATTTGCTCAATCTTTAAAACGTGGAGGCCGCCATACATTAAAATTAGAGACCCCTCAGCCAAAAATACAGCCTGCCACAAATAGACGAGGTAAGCAAACTAAGAGGAATAGTAAATCGACTGATTTAGAGTCAGAGGAAGAGCAACCAGGTGGACCTAGCACACGTCTTAGAAAAAGAACCCCAAAGCCTACAAAACTTTCAGAAGCGAAGCCGAAAGATAAAAAACCAATTGGCAAGAAAAAGGTGAAGAATGGTTCATCCTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGACGAGGAATCAGAGTATCTTTGTGACATCGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGCCATGCACAAACGAAATATTTGTCCTGTCAAGGGGTGTGGGAAGAAGTTTTTCTCACATAAGTACCTTGTGCAGCATCGTCGAGTCCACATGGACGACCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGCCCGACCTTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTTGTTTCGGATTTTAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGGTAGAGGTTAA 4680 42.67 MAATAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAPCSGSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCAKKGGLSSLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKIFREAGEGTTLGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPMCTGAEPRSSRLKDKRRSEGETVIKELFVQNIVENNTLLDILGRGASVVLLPPGSLESIYSRLRVGSHLRAKSRFPAGVCSSKEETKSPQSFDYDNLALENSPGINRVKGFYSANGLYSTLSESSTDNLCASSSRSLNANHERGGNVQSDGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGITSEGIATRDGHAVSSRQNSNRGKRDKCVSDGLYDVPVQAVNRQLTVADESYKANLNTEKRNETSALGMLALTYGHSSDSEEDHAEADAALNADDDAKLMICSSEDQYQFENSGLSSGEYCKNTAISNNDPSSYGVNAADQMQFQVNDYEEFGRARSDSKDSFNCSSESEMDGIGSTKKNGLSTRYQDSHVNVRSSLDADTDKPVFDKSTEPVEIENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVNILLLCHPDYPKMEAEAKLLAQELNMNHLWTDTMFRGATQDEEKRIQLALDSEEATPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDISWTMSDEKIDRKPENIQKNETVMVNRKSAGKRKMTYGSGTTKKAKPIESEDMVSDASVEDCIHQHHSILRNKRSKFVESNDAISDDSVEDDSCRKHGVPISKGVTYCGIDDTGSDDSLGDCHNLRRGFSGFKLPKWGEIEPALSDDSLEHYSSQHRGKNIKSKTEEYIERQDALSDECLESGSLKQYRRIPRSKQTKVLKKNAISHDIRDDSFLWHHQRPSRSKKAKSIESEDAVSEDSLENNSHQHRSMPQRKPVKRTAREDAFSDGPDEDDNSLLQHRNIRRNVQFKYSEREITSDDQLDDSANQSRRRVLRSKPVKTETISQMKQEILRPARRGASQTLKEEFAQSLKRGGRHTLKLETPQPKIQPATNRRGKQTKRNSKSTDLESEEEQPGGPSTRLRKRTPKPTKLSEAKPKDKKPIGKKKVKNGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELAMHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5307597 5315279 + CrPI670011_03g006380.1 Cre03g0638 492668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0638 1559 SMART cupin_9 195 364 IPR003347 -
Cre03g0638 1559 Gene3D Cupin 17 368 - -
Cre03g0638 1559 ProSiteProfiles JmjC domain profile. 198 364 IPR003347 -
Cre03g0638 1559 MobiDBLite consensus disorder prediction 1398 1412 - -
Cre03g0638 1559 MobiDBLite consensus disorder prediction 754 773 - -
Cre03g0638 1559 Pfam jmjN domain 25 58 IPR003349 -
Cre03g0638 1559 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1324 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cre03g0638 1559 MobiDBLite consensus disorder prediction 1371 1390 - -
Cre03g0638 1559 MobiDBLite consensus disorder prediction 1020 1042 - -
Cre03g0638 1559 MobiDBLite consensus disorder prediction 1207 1240 - -
Cre03g0638 1559 MobiDBLite consensus disorder prediction 1288 1309 - -
Cre03g0638 1559 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Cre03g0638 1559 FunFam Probable lysine-specific demethylase ELF6 17 368 - -
Cre03g0638 1559 ProSitePatterns Zinc finger C2H2 type domain signature. 1528 1552 IPR013087 -
Cre03g0638 1559 FunFam Probable lysine-specific demethylase ELF6 1493 1522 - -
Cre03g0638 1559 FunFam Probable lysine-specific demethylase ELF6 1523 1552 - -
Cre03g0638 1559 ProSitePatterns Zinc finger C2H2 type domain signature. 1468 1490 IPR013087 -
Cre03g0638 1559 SMART c2h2final6 1526 1552 IPR013087 -
Cre03g0638 1559 SMART c2h2final6 1443 1465 IPR013087 -
Cre03g0638 1559 SMART c2h2final6 1466 1490 IPR013087 -
Cre03g0638 1559 SMART c2h2final6 1496 1520 IPR013087 -
Cre03g0638 1559 MobiDBLite consensus disorder prediction 1288 1438 - -
Cre03g0638 1559 SUPERFAMILY beta-beta-alpha zinc fingers 1514 1548 IPR036236 -
Cre03g0638 1559 Gene3D Classic Zinc Finger 1464 1550 - -
Cre03g0638 1559 ProSiteProfiles Zinc finger C2H2 type domain profile. 1496 1525 IPR013087 -
Cre03g0638 1559 MobiDBLite consensus disorder prediction 745 773 - -
Cre03g0638 1559 SMART JmjN_1 23 64 IPR003349 -
Cre03g0638 1559 SUPERFAMILY beta-beta-alpha zinc fingers 1482 1524 IPR036236 -
Cre03g0638 1559 ProSiteProfiles Zinc finger C2H2 type domain profile. 1466 1495 IPR013087 -
Cre03g0638 1559 Pfam JmjC domain, hydroxylase 229 346 IPR003347 -
Cre03g0638 1559 SUPERFAMILY Clavaminate synthase-like 209 375 - -
Cre03g0638 1559 ProSitePatterns Zinc finger C2H2 type domain signature. 1498 1520 IPR013087 -
Cre03g0638 1559 ProSiteProfiles Zinc finger C2H2 type domain profile. 1526 1557 IPR013087 -
Cre03g0638 1559 MobiDBLite consensus disorder prediction 1207 1271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0638 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0638 Cre-Chr3:5307597 Cre08g0714 Cre-Chr8:20149282 2.40E-10 dispersed
Cre03g0638 Cre-Chr3:5307597 Cre10g0393 Cre-Chr10:2764424 1.20E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53292 PF02373 JmjC 1.20E-36 CL0029 Cre TF