Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0651 ATGGCCAAGATCAAGATCGGAATCAATGGATTTGGAAGAATCGGCAGGTTGGTCGCTAGAGTTGCTTTACAGAGAGACGATGTTGAACTCGTTGCTGTTAACGATCCTTTCATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGTCACTGGAAGCACAGTGAGGTGAAGGTGAAGGACTCTAAGACCCTTCTTTTTGGTGAAAAAGCCGTCACTGTTTTTGGCGTCAGAAATCCGGAGGAGATCCCATGGGGTGAGACCGGTGCGGAATACATTGTAGAGTCCACTGGTGTTTTCACAGACAAAGACAAAGCTGCTGCTCATTTGAAGGGTGGTGCTAAGAAGGTTATCATCTCTGCCCCCAGCAAGGATGCCCCCATGTTTGTTGTAGGAGTCAACGAGAAGGAATACAAGCCAGAACTTAACGTTATTTCTAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTGCAAAGGTTATCAATGACAGATTTGGCATTGTTGAGGGTCTGATGACCACTGTTCACGCAATCACTGCCACACAAAAGACTGTTGACGGGCCATCCAGCAAAGACTGGAGGGGTGGAAGAGCTGCTTCATTTAACATAATTCCTAGCAGCACTGGAGCTGCCAAGGCCGTCGGCAAAGTCCTCCCTGCATTGAATGGGAAATTAACCGGAATGTCTTTCCGTGTTCCGACCGTTGATGTCTCTGTCGTTGATCTTACAGTGAGGTTGGAAAAGAAGGCCTCTTATGAGGACATTAAGGCAGCCATCAAGGAAGAGTCTGAGGGAAAATTGAAGGGAATTTTGGGGTACACTGAAGACGATGTTGTGTCCTCTGACTTCGTTGGTGACAGCAGGTCAAGCATCTTCGATGCCAAGGCCGGCATTGCATTGAATGATAACTTTGTTAAACTTGTCTCGTGGTACGACAACGAAGTAGGATACAGTACTCGTGTCGTTGACTTGATTGTCCACATCGCATCTGTCCATGGACATCGACCCACCACTTTCACCTTAATTATTTTGCTCACTTTTCAAGGCTCCCCATTTCTTTCAGCTACCTCCTACGGACCATACATTCCCGTTCCGTCTCACACCAGTTATCCCCTTCATTTGCCACCGACCGCCGTTCCCACTTTCTTGTCGCTTTCTTTGTCTCTGGACTTTAAAACCCTTCCTTCTTCCATTCTCACCCAGTATTCATTTTGCAAACTGTTGACTCCTTGCCTTATCTCTCAAATTCCTTCCAAGATCAAGATTGGAATCAACGGATTTGGAAGGATCGGGAGGTTGGTAGCAAGGGTTGCTCTCCAGAGAAACGATGTTGAACTCGTCGCTGTTAACGACCCTTTTATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCATGGCCAATGGAAGCATCAAGACGTGAAGGTTAAGGATTCTAAGACCCTTCTCTTTGGTGAGCAGCCTGTTACAGTTTTTGGTGTCAGGAATCCAGAGGAGATCCCATGGGGTGAGACTGGAGCTGAGTATATTGTAGAGTCAACTGGTGTTTTCACAGACAAAGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCAAAGAAGGTTATCATCTCAGCTCCCAGCAAGGATGCTCCCATGTTTGTTGTGGGAGTCAATGAGAAGGAATACAAACCAGATCTCGATGTTATATCTAATGCTAGCTGCACTACCAACTGTCTTGCTCCTCTTGCAAAGGTCATTCATGATAGATTTGGCATTGTTGAGGGTCTGATGACTACTGTTCACTCAATGACTGCCACCCAAAAGACTGTTGATGGACCATCTAGCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATCCCTAGCAGTACTGGAGCTGCTAAGGCTGTTGGCAAAGTGCTGCCTGCATTGAACGGAAAACTCACCGGTATGGCTTTCCGTGTTCCTACCGTTGATGTCTCAGTAGTTGACCTTACAGTGAGGTTGGAGAAGCCAGCATCGTATGATGATATTAAAGCTGCCATTAAGGAGGAGTCTGAGGGAAAGCTGAAAGGAATTTTGGGTTACACAGAAGATGAGGTGGTGTCCACCGATTTTTTGGGTGACAACAGGTCAAGTATTTTCGACGCCAAGGCCGGGATCGCACTGACCGAACACTTTGTGAAGCTTGTCTCGTGGTATGACAACGAGTTAGGCTACAGTACTCGTGTTATTGACTTGATTGTTCACATTGCTTCTGTCCATTAA 2277 46.64 MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHSEVKVKDSKTLLFGEKAVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELNVISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKKASYEDIKAAIKEESEGKLKGILGYTEDDVVSSDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEVGYSTRVVDLIVHIASVHGHRPTTFTLIILLTFQGSPFLSATSYGPYIPVPSHTSYPLHLPPTAVPTFLSLSLSLDFKTLPSSILTQYSFCKLLTPCLISQIPSKIKIGINGFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHQDVKVKDSKTLLFGEQPVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPDLDVISNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDDIKAAIKEESEGKLKGILGYTEDEVVSTDFLGDNRSSIFDAKAGIALTEHFVKLVSWYDNELGYSTRVIDLIVHIASVH 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5408307 5414853 + CrPI670011_03g006510.1 Cre03g0651 492681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0651 758 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 573 580 IPR020830 GO:0016620(InterPro)
Cre03g0651 758 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 574 737 - -
Cre03g0651 758 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 569 587 IPR020831 GO:0016620(InterPro)
Cre03g0651 758 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 596 612 IPR020831 GO:0016620(InterPro)
Cre03g0651 758 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 534 547 IPR020831 GO:0016620(InterPro)
Cre03g0651 758 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 653 670 IPR020831 GO:0016620(InterPro)
Cre03g0651 758 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 693 708 IPR020831 GO:0016620(InterPro)
Cre03g0651 758 Gene3D - 4 331 - -
Cre03g0651 758 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 335 IPR020831 GO:0004365(PANTHER)|GO:0005829(PANTHER)|GO:0006096(PANTHER)|GO:0016620(InterPro)
Cre03g0651 758 FunFam Glyceraldehyde-3-phosphate dehydrogenase 425 584 - -
Cre03g0651 758 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620(InterPro)
Cre03g0651 758 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 580 737 IPR020829 GO:0016620(InterPro)
Cre03g0651 758 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cre03g0651 758 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 426 749 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cre03g0651 758 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 424 591 IPR036291 -
Cre03g0651 758 FunFam Glyceraldehyde-3-phosphate dehydrogenase 574 739 - -
Cre03g0651 758 Gene3D - 425 752 - -
Cre03g0651 758 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 170 IPR036291 -
Cre03g0651 758 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 425 528 IPR020828 GO:0051287(InterPro)
Cre03g0651 758 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287(InterPro)
Cre03g0651 758 FunFam Glyceraldehyde-3-phosphate dehydrogenase 4 163 - -
Cre03g0651 758 Gene3D Dihydrodipicolinate Reductase; domain 2 574 739 - -
Cre03g0651 758 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Cre03g0651 758 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Cre03g0651 758 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620(InterPro)
Cre03g0651 758 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287(InterPro)
Cre03g0651 758 SMART gp_dh_n_7 425 575 IPR020828 GO:0051287(InterPro)
Cre03g0651 758 FunFam Glyceraldehyde-3-phosphate dehydrogenase 153 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0651 K00134 - - csv:101213319 634.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0651 Cre-Chr3:5408307 Cre11g1159 Cre-Chr11:9302163 5.10E-179 dispersed
Cre03g0651 Cre-Chr3:5408307 Cre01g0209 Cre-Chr1:1462913 1.20E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015008 0 0 0 0 0 1 2 1 1 0 1 1 1 0 0 1 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16