Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0656 ATGGCTGCCCATTCCGTTGATTCCCGGAGCGGTTTCTGTCCTCAAACCAAGATTTACAAGAGCCTCCGACCACCCTTCTCGCTTCCGCCGTTATCTCAGCCACTCACCGTTGCCGGACATGCTCTTTCTGTTCTCCAATCATCTCTTCCTCCGCCGAACACTGCTGCTCTCGTCGACTCCGACTCCGGCGTCACTGTCTCTTACGCCCTTTTCCTCCGTCAAATCCGAAACCTCACCTCTAACCTTAGAGCTCTTTACTCCTTCTCCAATGGTCAAGTGGCTTTTATTCTTTCACCGACTTCTCTGCAAATTCCTGTGTTGTATTTCGCTCTCTTATCTCTCGGCGTTATTGTCTCTCCGGCTAATCCAATCAGTTCCGAATCGGAGATTGCTCACCAGGTTAGTCTCAGTAAACCGGTCATTGCCTTCGCTACTTCCTCAACGGCGTCCAAGCTCCCGAGGCTTCCACTTGGTACTGTACTGATAGATTCGCCGGAGTTTCTATCTATGATGACTGAAATTAGTCGATTGGAAGGAGTAAACGATGGCATTGTGGACGGAGAAATCAATCAAAACGACTCCGCGGCGATTCTTTACTCTTCAGGGACTACCGGACGAGTGAAAGGCGTCTTACTCTCTCACCGGAACCTCATATCGGCGATCTCTGGGGTTCAAGTATTGGAGAAAACGCCCCTCGAAGGAGAGATTGAGCCACATCCCGTTGCTCTGTGTCTATTACCTCTGTTCCATGTTTTCGGGTTCTTTATGTTGTTTCGATCGATTTCAGAGGGCAATACATTGGTTCTGATGCGTAAATTCGATTTCCAGAGGATGTTAGGAGCAGTGGAGAAGTATAGGGTTACATACATTCCGGTTTCTCCGCCGCTGGTGGTGGCGATGGCCAAATCGGAGTTGGTGGCCAAGTATGATCTCAGCTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCATTGATAAATTCCATCTCAGGTTTCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGGAGCGGCATCAAGAACTGTGGGGCCTGAAGAATGCAGTAATGCAGGTTCAGTAGGTCGCCTATCTGAAAATATGGAAGCCAAAATAGTTGATCCTTCGTCTGGAGAAGCCTTACCTCCTGGTCACAAAGGAGAACTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAAAGGGCAACCGCTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTTTGTTACTTTGATTCTGATGGATTTCTCTACATCGTTGATCGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCCATCCCGAGATTCTTGACGCTGCTGTGATACCCTATCCTGATGAAGAAGCCGGAGAGATTCCTTTAGCTTATGTGGTTAGAAAGCCTAAAAGTAATATCAGTGCGACTCAAGTCATGGATTACATTGCAAAACAGGTCGCACCATACAAGAAAATTCGACGAGTTTTTTTTGTCAACACAATCCCGAAATCGCCTGCAGGGAAGATTTTTAGGAGGGAGCTTGTCCAACATGCTCTCTCTCATGGTTCTAGCAAGCTATAA 1662 47.29 MAAHSVDSRSGFCPQTKIYKSLRPPFSLPPLSQPLTVAGHALSVLQSSLPPPNTAALVDSDSGVTVSYALFLRQIRNLTSNLRALYSFSNGQVAFILSPTSLQIPVLYFALLSLGVIVSPANPISSESEIAHQVSLSKPVIAFATSSTASKLPRLPLGTVLIDSPEFLSMMTEISRLEGVNDGIVDGEINQNDSAAILYSSGTTGRVKGVLLSHRNLISAISGVQVLEKTPLEGEIEPHPVALCLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFQRMLGAVEKYRVTYIPVSPPLVVAMAKSELVAKYDLSSLQILGCGGAPLGKEVIDKFHLRFPNVEIIQGYGLTESSGAASRTVGPEECSNAGSVGRLSENMEAKIVDPSSGEALPPGHKGELWLRGPGIMKGYVGDERATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEILDAAVIPYPDEEAGEIPLAYVVRKPKSNISATQVMDYIAKQVAPYKKIRRVFFVNTIPKSPAGKIFRRELVQHALSHGSSKL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5457704 5460897 - CrPI670011_03g006560.1 Cre03g0656 492686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0656 553 CDD 4CL 29 541 - -
Cre03g0656 553 Gene3D - 447 547 IPR045851 -
Cre03g0656 553 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Cre03g0656 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 547 - -
Cre03g0656 553 Pfam AMP-binding enzyme 52 408 IPR000873 -
Cre03g0656 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 541 - GO:0016405(PANTHER)
Cre03g0656 553 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Cre03g0656 553 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Cre03g0656 553 Gene3D - 32 446 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0656 Cre-Chr3:5457704 Cre05g1684 Cre-Chr5:28243029 5.60E-135 dispersed
Cre03g0655 Cre-Chr3:5447969 Cre03g0656 Cre-Chr3:5457704 7.30E-252 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0656 K01904 - csv:101211791 969.148