Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0662 ATGGGAAATGGCGGCGAAAGAATGGCGTTGGCTGTTTGCAGCGACAGGAACATGGGATTGGGGATTACTATTTGGGATGTGAAAACAGGCCAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTCCATACGGTTTGATTTGCTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATCTTCATTTGGTCCCTCAACAAGCCTCAGCCGCCTGTTATGAGCTATACATTAGAGCCCATTGGACCACTTGCCTCAACAAAGGACAGTGTATATCTTGCAGGCGGAACTCATTCGGGAAATATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGCTTTGGAGTGGTCATCATAAACCTATAAAACGCGTCCTATTTTCTTGGGATGATTCATTTCTCATTACTGGTTCAGCTGATGGAATGATTTGTGTCTGGTCCATGATTGGTTTGCTGGATGTGGAACTTGTGGGAAGCTCAAAGCCAATAGTGTATTGTCTCATGGAACATAAGTCATCTTTAACTGGTCTACTCACCATGTCTGGCTGCTCGATGTCGATAATCATTTCAAGCTCCCTTGATGGCAGTTTAAAGTTTTGGGATCTGATGTCAGGAATGATTAAGGGAACTCAAGCTCATATAGAGGGGATCACTGCAATTGTTCTTCATCCAACTGAGCAAGTTCTGTTCTCTGGGATCGTGGACGGGCAAATTTTTGCTAGCAGGCTTGAATTTGGATTTGACAATTGCATTAACATTAAAGAAAACCAACTACTTGCACCAAAAGGACACAAAGGAGCTATTACTGCTCTGGCTTTCAGTCAGATGGATCTAATTTCTGCATCTGAGGATTGCACTGTCTGCATATGGGACATCAGCAGTCAGAGGATAATACAAAAGCTTGACCATAAGAAAGGGAGAATAACCAATTTGGTAGCAGTTCCACAGTCGTCCTTGATCTCTACATCAAATCGTAAGAGAGTCTTGAATCAATTCTCCGTGTCCTCCCTCGACAAGTATCCTCAGCCTGACAACTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCTCTCCGAGAGAATCTGAATTCCATCGGATTCACGAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGACTGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGGCGAATGTGGGCTTCCAGAATGACAAAGCAAGTGATGGACATGAACAACCATCTTCAATCACGGTTAGTAGACATGATGCGGATTCGATTGTTCGGACCTGCAAAAATTAGCTCATCCTCGAAGAAACAAAAAGATGTAAGAGATCGAGTTGCAAGGACGAGGAAGAAGCGTCCATTGTCATTCCATTAA 1422 44.02 MGNGGERMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGLICLRNEFLVASQTRKEGSVGGGSIFIWSLNKPQPPVMSYTLEPIGPLASTKDSVYLAGGTHSGNIHLWEVGSGKLLKLWSGHHKPIKRVLFSWDDSFLITGSADGMICVWSMIGLLDVELVGSSKPIVYCLMEHKSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLFSGIVDGQIFASRLEFGFDNCINIKENQLLAPKGHKGAITALAFSQMDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSNRKRVLNQFSVSSLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVETNLERRMWASRMTKQVMDMNNHLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRKKRPLSFH 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5514178 5517039 - CrPI670011_03g006620.1 Cre03g0662 492692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0662 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 158 - -
Cre03g0662 473 SMART WD40_4 214 252 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 SMART WD40_4 304 343 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 SMART WD40_4 264 301 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 SMART WD40_4 118 157 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 SMART WD40_4 80 115 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 SMART WD40_4 170 211 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 Gene3D - 167 357 IPR015943 GO:0005515(InterPro)
Cre03g0662 473 PANTHER WD-REPEAT PROTEIN 18 8 437 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Cre03g0662 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Cre03g0662 473 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Cre03g0662 473 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Cre03g0662 473 SUPERFAMILY WD40 repeat-like 67 350 IPR036322 GO:0005515(InterPro)
Cre03g0662 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Cre03g0662 473 MobiDBLite consensus disorder prediction 459 473 - -
Cre03g0662 473 Gene3D - 3 165 IPR015943 GO:0005515(InterPro)
Cre03g0662 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 158 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 220 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Cre03g0662 473 MobiDBLite consensus disorder prediction 445 473 - -
Cre03g0662 473 Pfam WD domain, G-beta repeat 119 157 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 Pfam WD domain, G-beta repeat 176 211 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 Pfam WD domain, G-beta repeat 272 301 IPR001680 GO:0005515(InterPro)
Cre03g0662 473 ProSitePatterns Trp-Asp (WD) repeats signature. 198 212 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0662 K14829 - - csv:101212515 840.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0662 Cre-Chr3:5514178 Cre05g2189 Cre-Chr5:33611874 2.70E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21