Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0665 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAAAGATCTTCGTCCTCGGAGGATAAGCCATCGTCACCGAAGCGTCAAAAGGTGGAAAATGGGTGTGGCTCAGAGAAATCGATGCCGGCGGCGGAGAATTCTAAGGAATTATGCACCGCGCCGACTGTGGATCCCGGAGAGCATGGACCTGGCGGTGGTCCGATCGCTGGAGTTGACGTGGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCCGTCGCTCTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTAGGGGATAAGCCTAGGAGTTCATTTTCATCATGGAGTCACTATGCTGCGAAGCAGAATCCAAATTTTGAAACGACAACTCCTTGGTGTAGGCTTCTCTCACAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACAATTAGTGGGACACTTTGCAAGATCAAGCACACTCAGCGTGACGGTAGTGCTGTGGCTGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACTGTCAAGAAGAGCACCAACTGTGTGCTAAATTCGGGTGACGAGGTGGTCTTTGGTGCTTTGGGGAATCATGCTTATATATTTCAGCAACTTATGAATGAGGTTTCAGTTAAAGGTCTAGATGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGTGATCCGTCTGCTGTGGCCGGGGCCTCGATCTTGGCATCTCTTTCAAGTCTCAGGCAGGATATTTCACGTTGGAAGCCTCCTTCTCAGACCAGCAGTAAAACACACCAAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGATGCTGTCATAGAGGCAGGCAATGTAATGGAAGAAAGAAACCAGTGGATTGGAGAGTTGCAGCCAGCATCAACTTCGGGAATGTCTTTGCGGTGTGCAGCCTTTAAAGAAGATGTTCTTGCAGGGATTGTTGATGGAAGGGACTTAGAAGTTTCATTTGACAACTTTCCATACTATTTGAGTGAGAATACGAAGAATGTGCTTATTGCTGCTTCTTTCATACACTTGAAGCATAAAGAACATTCAAAGTATACCTCAGAATTAAATACGGTGAATCCACGAATTCTGCTTTCTGGTCCCGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGTGCTAAGCTACTCATATTTGATAGCCATTCATTTTTGGGCGGTTTATCATCAAAGGAAGCAGAGCTGTTGAAGGATGGAATAAATGCAGCAAAGTCTTGTAGCTGTTCTAAACAGAGTATGGCATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTATTCACCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAGATTTATAGGTTCAGCTTCTGGGGGGATATATCCTACAACATCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAACTCTTCGTCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTAATGCAACCGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATACTTATTGATATTTTATTTGAGGCGGTATTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTCGGAAATTTAGACTCCTATTCTACTTTTAAAATTAGACTGGAAAAGCTTCCTGACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAAGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGATTACATGACAGAGGAAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTATTTCCCAATAAAGTTACAATCCATATGCCGCAGGATGAGGGCCTTCTTGTGTCATGGAAACATCAGTTAGAACGAGATGCCGAAACTCTCAAAATGAAGGGAAATCTGAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGGATGGATTGTGAAGGTTTAGAGACATTATGCATCAAGGATCAAACACTTACGAACGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGTGAGAGCATTCAATACGGGATCAGCATCTTACAGGCTATCCAGAATGAATCTAAGTGCTTGAAGAAGTCACTTAAGGATGTTGTCACGGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCTAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGCAAGGGGCAATTGACCAAGCCATGCAAAGGTATTCTGTTATTTGGCCCACCTGGAACAGGTAAGACGATGCTTGCAAAAGCTGTTGCTACCGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACGTCAAAGTGGTTCGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACATGAGGCCATGCGGAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCAAACAGAGCAAAAATACTTAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGAATTTGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGAATCTTTGTGTTGCTGCTGCTCACCGTCCAATTAAAGAGATATTGGAGAAGGAAAAAAAGGAGCGAGCTGCAGCTCTCGCAGATGGCAGGCCTGCTCCAGCCCTTAGTGGAAGTGAGGATATTCGGCCTCTAAATATGGATGACTTTAAATATGCGCATGAACGGGTATGTGCGAGTGTTTCGTCGGAGTCTGTAAACATGACAGAGCTGTTACAGTGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATAAGGAAATCACATCAGTTCGCAATGGCGGTCTCATTGAGCGATGTCAAGTCGGCAGCCGGTCTAAAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCAAAAGATGATATCGCTGTTTACGAAGCTATCTCCAAACCCGTTTCCAGCGAATATGTCAACGTATCTAGGTGGTTCAATCACATTGAAGCACTCTTGAGAGCCTCTGCTGGTTTTGGAGAGGGTTCTGGCGTTAAGTTCGATGCAGAAGCAATCGCAACCCCACCAGCTGCCGATGCTAAGGCTAGCGCTGATGACGACGATGACGACGATATGGATCTGTTTGGTGAAGAGACTGAAGAGGAAAAGAAGGCTGCCGAAGAGCGCGCAGCTGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCCGTAAGAAGTGTTCAGATGGAAGGATTGCTGTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTGCAGATAATGCTCACAATTGTTGACGACCTTGTAGTTGTGATATCGTTGCCTTCAACAAAATCTAAGATTGAGCTTTTTGTCAAGTCCAAGAGCTGGTCATTCCAAAGATGA 4230 43.95 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPAAENSKELCTAPTVDPGEHGPGGGPIAGVDVGEGVSSLKEDAAPAAVALTTPIAEGTSLVGDKPRSSFSSWSHYAAKQNPNFETTTPWCRLLSQFGQNSNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQRDGSAVAVLESTGGKGSVMVNGLTVKKSTNCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSSKTHQEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVMEERNQWIGELQPASTSGMSLRCAAFKEDVLAGIVDGRDLEVSFDNFPYYLSENTKNVLIAASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGINAAKSCSCSKQSMASTETTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCNATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKIRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKCLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKERAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFIRKSHQFAMAVSLSDVKSAAGLKKLDEYLLSRSYISGYQASKDDIAVYEAISKPVSSEYVNVSRWFNHIEALLRASAGFGEGSGVKFDAEAIATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVVVISLPSTKSKIELFVKSKSWSFQR 1409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5538163 5555222 - CrPI670011_03g006650.1 Cre03g0665 492695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0665 1409 FunFam Elongation factor 1-beta 1 like 1319 1407 - -
Cre03g0665 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 1159 IPR027417 -
Cre03g0665 1409 MobiDBLite consensus disorder prediction 1277 1302 - -
Cre03g0665 1409 Pfam EF-1 guanine nucleotide exchange domain 1327 1397 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre03g0665 1409 MobiDBLite consensus disorder prediction 282 321 - -
Cre03g0665 1409 SUPERFAMILY eEF-1beta-like 1322 1402 IPR036219 -
Cre03g0665 1409 CDD EF1B 1323 1386 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre03g0665 1409 MobiDBLite consensus disorder prediction 22 36 - -
Cre03g0665 1409 Pfam ATPase family associated with various cellular activities (AAA) 918 1048 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre03g0665 1409 Pfam FHA domain 153 222 IPR000253 GO:0005515(InterPro)
Cre03g0665 1409 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515(InterPro)
Cre03g0665 1409 MobiDBLite consensus disorder prediction 476 522 - -
Cre03g0665 1409 Pfam AAA+ lid domain 1072 1107 IPR041569 -
Cre03g0665 1409 MobiDBLite consensus disorder prediction 1284 1298 - -
Cre03g0665 1409 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 876 1052 - -
Cre03g0665 1409 Gene3D - 876 1157 IPR027417 -
Cre03g0665 1409 Gene3D - 131 240 - -
Cre03g0665 1409 Gene3D - 1050 1144 - -
Cre03g0665 1409 SUPERFAMILY GST C-terminal domain-like 1157 1255 IPR036282 -
Cre03g0665 1409 MobiDBLite consensus disorder prediction 1 21 - -
Cre03g0665 1409 SMART EF1_GNE_2 1325 1404 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre03g0665 1409 Coils Coil 1297 1317 - -
Cre03g0665 1409 CDD RecA-like_ATAD1 881 1047 - -
Cre03g0665 1409 Gene3D - 1163 1259 - -
Cre03g0665 1409 CDD FHA 134 232 - -
Cre03g0665 1409 SMART AAA_5 914 1051 IPR003593 GO:0016887(InterPro)
Cre03g0665 1409 MobiDBLite consensus disorder prediction 1 76 - -
Cre03g0665 1409 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 1289 1297 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre03g0665 1409 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 144 1181 IPR051701 GO:0005741(PANTHER)
Cre03g0665 1409 ProSitePatterns AAA-protein family signature. 1021 1040 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre03g0665 1409 FunFam Elongation factor 1-delta 1 1192 1267 - -
Cre03g0665 1409 Gene3D - 1318 1408 IPR014717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0665 Cre-Chr3:5538163 Cre09g0565 Cre-Chr9:5325612 0.00E+00 dispersed
Cre03g0665 Cre-Chr3:5538163 Cre07g1131 Cre-Chr7:23021300 5.20E-161 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0665 - - - 0.0