Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0668 ATGGCGACGACGACCACCAGTATTGGCGGCGGGGGCGGCGGTGGTGGTGGGGAGGATAGAGTTATGGCTACCGCTCAGCAGATAGTCAATAGCCTTAATACTCCTAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGTTTTGACAATCGTCTTTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAAGGAGGAGGATCGATTTGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTCGGAACTCGATTAATTGGGAGGACTCGCCAGATGAGGCGGCTGAGTACTTAACGGCGGTCGATGATATTATTCAGTGGATCGACGACTTGTCAATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCCAGGCTTGAGGATGAGTTTCGTCATTTGTTGATTCGAAGCACCGTCCCTCTCGATGCTGAGCATCTCTACGGTTCAATTCGTAAGGTTTCCCTCTCTTTCGCTTCACACGACAGCGAAAATTCCGATGAATTTGAGTCGTTTGCCGGTGCTGACCGTGGTTCGGGAATCTACCATGAGCGTGGTGTTAGTTTAGGCGATGATTTGCGGGTCGATTTGATTCATCCTGACGCTGTTGTTGATTTGAAAGAGATCGCCGACCGGATGATTCGGTCTGGATACGAGAAAGAGTGTGTTAATGTGTATACTGGTGTCCGACGCGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGACTTGAGAAGCTAAGTATTGAGGATGTCCAGAAAATTGACTGGAAAATCTTGGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCAGTGTTCGAGTACTTTTGACTGGCGAGAAGCGACTGTGTGACTATATCTTTAGTGGGTCTGATGACTCTGAGGAAGTTTGCTTCAATGAGACTGCAAAAGGGTGCATCAGACAATTACTAAATTTTGCAGAAGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGAGTACGTTTTCCCTGATTTGCAGGCTATGGTCACTGATGAATTTGTGATTGAGGAGGCGCGAGGAGTACTTTCTAGGCTGGGAGAGGCCGCCAAAGGTACATTTGCTGAATTTGAGAATGCTGTTCGGAGTGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTGGATGCACTTTTAGAAGGCGACGATGAGGATTTGCATCATCTAGGGGGTGATGGTGCTGATAATTTGGAGTTAGAAACTATGTCTCCATTAGCTCGTCGTCTGTTTTCATTGATATCAACACTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGTGATGATGCAATACAGTATATATTTCTCATGAACAATATTCAATATATTGTGCAGAAAGTGAAGGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGTAAACGCCGTGGCCAAGTTCGCATTTATGCGACGAACTATCTTAGGGCATCTTGGGGCAAACTATTGTCTTTCTTGAAGGAAGAAGGTACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATCTATAGAGTTCAGACAGGTTGGAAGGTTCCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTGTCCGCAAAAGCGCTACCTGCATATCGTGCCTTCTTGGGAAGACATGGAGGTCAGTTAGAGAATACAAGACATGCTGGGAGAGATACTGAACCGACTCAATTGACAGCTTTGGTTTTTGACAAGAGAAAGAAGAAGAAAACGGATTTGGGAATTAACAAATCGACAAGCAGGAAATCGCAATTCAGAGCAGCTTCTTAA 1992 45.03 MATTTTSIGGGGGGGGGEDRVMATAQQIVNSLNTPKEVRDDMLLIFSSFDNRLSNITSLVNSGDSKKEEDRFEAAEKVILRWDSGHGASRNSINWEDSPDEAAEYLTAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHLLIRSTVPLDAEHLYGSIRKVSLSFASHDSENSDEFESFAGADRGSGIYHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGLEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVFPDLQAMVTDEFVIEEARGVLSRLGEAAKGTFAEFENAVRSETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDALLEGDDEDLHHLGGDGADNLELETMSPLARRLFSLISTLETNLERKSKLYGDDAIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRVQTGWKVPDAQLREELRISVSAKALPAYRAFLGRHGGQLENTRHAGRDTEPTQLTALVFDKRKKKKTDLGINKSTSRKSQFRAAS 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5569019 5573784 - CrPI670011_03g006680.1 Cre03g0668 492698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0668 663 SUPERFAMILY Cullin repeat-like 72 622 IPR016159 -
Cre03g0668 663 MobiDBLite consensus disorder prediction 1 20 - -
Cre03g0668 663 Pfam Exocyst complex component Exo70 N-terminal 72 152 - -
Cre03g0668 663 PANTHER EXOCYST COMPLEX PROTEIN EXO70 55 624 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Cre03g0668 663 Gene3D Exocyst complex component Exo70 86 642 - -
Cre03g0668 663 Pfam Exo70 exocyst complex subunit C-terminal 280 620 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0668 K07195 - - csv:101212753 1143.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0668 Cre-Chr3:5569019 Cre03g1627 Cre-Chr3:32303281 6.30E-242 dispersed
Cre03g0668 Cre-Chr3:5569019 Cre02g2353 Cre-Chr2:36944713 6.60E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2361 . 12 653 EXO70 exocyst subunit family AT5G03540 75.9 1.1e-283 972.6
Cre04g1139 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 2.8e-266 914.8
Cre04g1139 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 3.1e-299 1024.2
Cre05g2361 . 14 653 EXO70 exocyst subunit family AT5G52340 74.4 1.6e-271 932.2
Cre04g1139 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.4e-176 615.9
Cre05g2361 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 3.2e-165 578.9
Cre03g0365 . 1 623 EXO70 exocyst subunit family AT5G58430 67.0 1.4e-246 849.4
Cre03g0365 . 1 622 EXO70 exocyst subunit family AT1G07000 52.5 3.9e-174 608.6
Cre07g1891 . 60 673 EXO70 exocyst subunit family AT5G13150 53.6 1.0e-175 614.0
Cre09g1672 . 111 722 EXO70 exocyst subunit family AT5G13990 54.5 6.5e-189 657.9
Cre07g1809 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.1e-216 750.0
Cre07g1809 . 9 607 EXO70 exocyst subunit family AT1G54090 61.8 3.3e-208 721.8
Cre07g1809 . 9 608 EXO70 exocyst subunit family AT3G14090 64.2 2.0e-218 755.7
Cre03g1627 . 27 664 EXO70 exocyst subunit family AT5G50380 62.0 2.2e-226 782.3
Cre03g0668 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.2e-211 733.4
Cre08g1199 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 3.0e-295 1011.1
Cre02g1670 . 58 596 EXO70 exocyst subunit family AT3G55150 50.1 1.4e-145 513.8
Cre02g1670 . 31 596 EXO70 exocyst subunit family AT2G39380 50.1 5.1e-148 521.9
Cre10g2192 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.5e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74