Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0692 ATGGCAGCTTTTTCTTATCAATACCAACCCTTTCTTCTTGACTCCATTTTCTTGCCCAACAATCCTCTCAAAATGGGAGGCTTTTTTGATGACCAAAATTTCAACACAAATTGTTTCTCTCAATTTTACCCTCAAGACCAACAACAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCCACTTTGGTCGACCGATCCGACAGCGCCGAACCGCCGGTCGGAAATCAGTTGAAACCGGCTGTTACGGTTACCGTAACTTCCCCTTGTACTAAGAAAAGGAAGAGCCGGAATAATTCTTCCGCCACCTCCGCTCAATCCAAGGGTACTACTGAGAGCACTGCGAAAAAGCAGAAAAGTAAAGGGGAACACGAAGGGAAAGAAAAAGATCATCAAAAGGCTAAAAATGGGAAGAAATTAGAGGAGAAAAAAATTTTAGAAGAAGGTGGTGCAACCACTGGTTACATTCATGTTAGAGCTAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAGAGGGTGAGAAGGGAGAAGATTAGCGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGAAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGCCTAATGATCCAACCAGAGATGACGTCGTTGAGTAGCATAACACCACAACTTCCAGCGATGGCACAATGTAGCATCGTGGCACCACCGACGTTGATCGACACGACCCCTTCGACGACTCCATCTCCGGCAATCTCCGCCGCAAATAATTTTCCCTTAATGGACTCTTCAGCTAATTTGTTTCTATTTCAACAAGGGATAAGCGCAAATAATGGCTACTCCCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACGTATGTTACTTCCATTAA 1065 44.04 MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDDQNFNTNCFSQFYPQDQQQQPIYHFPDLSKQSPESSTLVDRSDSAEPPVGNQLKPAVTVTVTSPCTKKRKSRNNSSATSAQSKGTTESTAKKQKSKGEHEGKEKDHQKAKNGKKLEEKKILEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPEMTSLSSITPQLPAMAQCSIVAPPTLIDTTPSTTPSPAISAANNFPLMDSSANLFLFQQGISANNGYSQSSQDNVKVSSWDVEDQKRKLLISSGIGDNVCYFH 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5832425 5834242 - CrPI670011_03g006920.1 Cre03g0692 492722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0692 354 SMART finulus 175 225 IPR011598 GO:0046983(InterPro)
Cre03g0692 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 235 IPR036638 GO:0046983(InterPro)
Cre03g0692 354 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983(InterPro)
Cre03g0692 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983(InterPro)
Cre03g0692 354 FunFam Basic helix-loop-helix transcription factor 166 238 - -
Cre03g0692 354 MobiDBLite consensus disorder prediction 56 72 - -
Cre03g0692 354 MobiDBLite consensus disorder prediction 56 151 - -
Cre03g0692 354 CDD bHLH_AtBPE_like 159 244 - -
Cre03g0692 354 MobiDBLite consensus disorder prediction 85 118 - -
Cre03g0692 354 Gene3D - 166 236 IPR036638 GO:0046983(InterPro)
Cre03g0692 354 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 60 314 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre03g0692 354 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0851 Cre-Chr2:5344030 Cre03g0692 Cre-Chr3:5832425 5.80E-32 dispersed
Cre03g0692 Cre-Chr3:5832425 Cre09g0809 Cre-Chr9:8075744 1.40E-33 dispersed
Cre03g0692 Cre-Chr3:5832425 Cre06g2679 Cre-Chr6:34286817 1.10E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53297 PF00010 HLH 6.90E-07 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0692 - - - 0.0