Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0710 ATGCTTCTTGAATCTTCAAGTTCGAACATGAGCCCTTCCAAATCTTGTCTACGCCCTGTCGGTTGGTTTGGTGGATGTGTGCGATCTCTTTCCGAGTTCTTTTTCTGGTTGAACTTTCGACTTTTTATGCTTAGGGTTTGGGTAATGGCTCTGGCAGAGGTGAAAACGCTGTATCTGCAATTTCTTCCGCTTTTCATCTTAATTTGGGTATCCAGAATGGGCGTCTCGGACACTATGTTCAACGACTCCGTAAGTGGGTATGCGGTTGTTTCCAGGAATGAAAATCCAAAAGGACGGTGTCCACATGGTTGGTTTATTAGCCCAAACAAGACCAAGTGCTATGGTTTCATGTCGAGTCCAAAATCATGGAATGATTCAGAGACCCAATGTAATGGTTTTGGTGGGAACTTAGCAGCTCTCATAACATGTCAAGAGTTTAGCTTTGCACAAGATCTATGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCGTTCAACTCTTCAAATGATTTTGTTTGGAAATGGTCAGATAATGTATCGAAATGGAATGATTCCATTATTCCCAGAACAACTTTGCAATCTAACTGCAAAAATGTCTCTTGCCGCATGAATGATTCGGTTGAAACATGTACTTTAATATTTGGGGGACCAGCAACACTGTTCCTTAGGGATGAGAAATGCAGCAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACGTTAGCTGTGGTGATTTGGCTTCTTGCCCACAAGAGGAGCAAGAAACGGAGAAGGTCCCGGAAGCCATCCAACCCAGCAGCTTCTGCACTGGTGCCCCCCTCGTGGAAGGTGTTTACCAAAGAAGAGCTAAGATCAATAACAAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGACACAAAAACGGGTGGTACATACATTGGACTTTTGCCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTCCAGAGGAAAAAAGAGTTTCATTCCGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTACCAAGAGGTGGTCGATGCTTAGATTGGACCATGAGAATGAAAATTGCCACGACTCTTGCCCAAGGGATTGCGTTCCTTCATGACAAGGTCAAGCCACATGTGGTACATCGTGATATCCGTGCGAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTAGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAATGAGCTAACCACAAAAAGTGATGTCTATAGTTTTGGGGTGCTACTGCTTGAAATTGTGACCGGTCGAAGACCTGCACAGGCAGTTGATTCGGTTGGTTGGCAGAGCATTTTCGAATGGGCAACGCCTCTCGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACAGCCACTTCCACTTCTGAAATTCCAGAGGCTGGTGTTGTTCAGAAAGTCGTGGACCTTGTGTATGCTTGCACACAGCATGTTCCGTCCATGCGCCCTAGAATGTCGCACGTTGTTCATCAGCTGCAACAATTGGCGCCCTCACCTCTCACACATCTCACTATGAAGTAA 1836 44.72 MLLESSSSNMSPSKSCLRPVGWFGGCVRSLSEFFFWLNFRLFMLRVWVMALAEVKTLYLQFLPLFILIWVSRMGVSDTMFNDSVSGYAVVSRNENPKGRCPHGWFISPNKTKCYGFMSSPKSWNDSETQCNGFGGNLAALITCQEFSFAQDLCNGTLGGCWVGGRAFNSSNDFVWKWSDNVSKWNDSIIPRTTLQSNCKNVSCRMNDSVETCTLIFGGPATLFLRDEKCSSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYIGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRCLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTHLTMK 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5972119 5975149 + CrPI670011_03g007100.1 Cre03g0710 492740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0710 611 Gene3D Transferase(Phosphotransferase) domain 1 396 606 - -
Cre03g0710 611 PANTHER OS01G0750732 PROTEIN 208 600 IPR050885 -
Cre03g0710 611 SUPERFAMILY Protein kinase-like (PK-like) 293 597 IPR011009 -
Cre03g0710 611 SMART CLECT_2 100 238 IPR001304 -
Cre03g0710 611 SUPERFAMILY C-type lectin-like 83 241 IPR016187 -
Cre03g0710 611 Pfam Lectin C-type domain 120 238 IPR001304 -
Cre03g0710 611 FunFam C-type lectin receptor-like tyrosine-protein kinase 297 395 - -
Cre03g0710 611 Pfam Protein tyrosine and serine/threonine kinase 327 597 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0710 611 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 396 611 - -
Cre03g0710 611 ProSitePatterns Tyrosine protein kinases specific active-site signature. 442 454 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0710 611 SMART tyrkin_6 323 597 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cre03g0710 611 ProSiteProfiles Protein kinase domain profile. 320 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0710 611 Gene3D Phosphorylase Kinase; domain 1 278 395 - -
Cre03g0710 611 ProSiteProfiles C-type lectin domain profile. 109 238 IPR001304 -
Cre03g0710 611 Gene3D - 85 241 IPR016186 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0710 Cre-Chr3:5972119 Cre07g1603 Cre-Chr7:31509250 9.80E-56 dispersed
Cre03g0710 Cre-Chr3:5972119 Cre05g2494 Cre-Chr5:36345912 1.30E-55 transposed
Cre03g0710 Cre-Chr3:5972119 Cre06g1669 Cre-Chr6:13440115 1.30E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63942 PF07714 PK_Tyr_Ser-Thr 1.60E-39 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0710 - - - 0.0