Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0742 ATGGCCTCAAAATCCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAATTCCTCCCTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAATTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACCGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGCTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGCAAAGCTGGGTTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGCTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTTTTCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCAAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTTATCGGCAAACCTTGCTAA 1146 43.8 MASKSSHLLLILLFILSFINSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGAKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGFVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFFQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCFIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6296402 6298461 + CrPI670011_03g007420.1 Cre03g0742 492772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0742 381 Gene3D - 34 374 IPR012334 -
Cre03g0742 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Cre03g0742 381 PANTHER PECTATE LYASE 18-RELATED 10 376 IPR045032 GO:0030570(InterPro)
Cre03g0742 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cre03g0742 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cre03g0742 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cre03g0742 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cre03g0742 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cre03g0742 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cre03g0742 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cre03g0742 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cre03g0742 381 SMART amb_all 108 305 IPR002022 -
Cre03g0742 381 Pfam Pectate lyase 114 299 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1583 Cre-Chr1:28921540 Cre03g0742 Cre-Chr3:6296402 1.60E-88 dispersed
Cre03g0742 Cre-Chr3:6296402 Cre06g1543 Cre-Chr6:10356445 4.10E-121 dispersed
Cre03g0742 Cre-Chr3:6296402 Cre04g1794 Cre-Chr4:35853262 1.40E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0742 K01728 - csv:101211379 736.873