Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0757 ATGTCTTGTTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTTTCTTTCCGCTCATTTTTGAGCCCTTTTCAGCTTCCTTCCCAGAATTCGAGCTCAACTTACCCTGGCCGATCATGCTCAGTTTCTCCAATCCACTGTGGTCTTCGGGAGCTTCGAGACCGTATCGAATCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCCTTCTCCGAAGCTTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTCGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGACCGAGGTCTTTGCGGTGGTTTCAACAACAATATCATTAAGAAAGCTGAAGCTAGAATATCAGAATTGAAGGCCCTTGGTCTTGATTACACTGTCATTAGTGTTGGTAAGAAGGGTAATTCCTATTTCCTTCGCCGGCCTTACATTCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTTATTCACACTCTTCTTCCTCTCTCGCCCAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTTGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTTTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTAGAATGAGTGCTATGAGTAATGCAACTGATAACGCGTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1131 43.06 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6435397 6436527 - CrPI670011_03g007570.1 Cre03g0757 492787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0757 376 NCBIfam ATP synthase F1 subunit gamma 55 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 FunFam ATP synthase gamma chain, chloroplastic 123 246 - -
Cre03g0757 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 FunFam ATP synthase gamma chain, chloroplastic 54 121 - -
Cre03g0757 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cre03g0757 376 FunFam ATP synthase gamma chain, chloroplastic 272 375 - -
Cre03g0757 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 Coils Coil 56 76 - -
Cre03g0757 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 375 - -
Cre03g0757 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cre03g0757 376 Gene3D - 123 246 - -
Cre03g0757 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Cre03g0757 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1517 Cre-Chr1:28367134 Cre03g0757 Cre-Chr3:6435397 1.10E-18 dispersed
Cre10g0750 Cre-Chr10:7304828 Cre03g0757 Cre-Chr3:6435397 1.40E-102 wgd
Cre03g0757 Cre-Chr3:6435397 Cre04g1814 Cre-Chr4:35978865 1.10E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0757 K02115 - csv:101214408 669.077