Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0778 ATGTTTGGAGCACATGGTTTTGAAGATCATCATGAGGATCTACTACTGGAGATGACCCAGAAAAATTTTGAATGTGAACTGGAAAAATTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTTGGGAGAGGAACTTTGTGTTCTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATACAGGAAATGGAAGCGTTTTTTAAGGAGTGTCCACATCCGGATGACAAGCAAAGAAAGCAGCTGAGCCGTGAGTTAGGACTCGAACCCCTCCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACACAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAGAAATTAAGAGCAGAGAACATGAGGTACAAAGAAGCTCTAAGCAATACAAGTTGCCCTAATTGTGGAGGTCCTGCTGCTCTTGGTGAAATGTCCTTTGATTCCCAACATTTGAGAATTGACAATGCACATCTAAGAGACGAGATAGAGAGATTAAACAGTAGTAGCAAATATGGTGGGAAGGCATGGGGTTCTCATTCTCATATGGTTCCATGTGGAGGGCAGCTTGATCATCTTGGGGTTGGAAGATCATCATTAAAGCCCCAACAAGCTGATCATTTGTTAGGGGAAATGTATGGAGGAGTGGGAGAGACAATGTTAAAAAAGTCTGTGACTACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCTGTTTCAGCCATGGAAGAAGTTTGTAGAATGGCTCAAGCAGGTGAGCCGTTGTGGGTTACTGGTGAAAACTCCATGGAAATGCTGAATGAAGATGAGTACTTGAGGACTTACTCTACACGAATTGGCCCTAGAATTGTGGGGCTTAGCTTTGAAGCTTCAAGGCAAACCTCCATTCTTGCTTTCAATCATTTAAAACTTGTCCATGTTCTCATGGACGTGAATCAATGGTCAACCATATTTTGTGGGATTGTTTCAAGAGCATTGACACTTGAAGTCTTATCAACCGGAGTTGGTGGCGACTATAATGGAGCTCTGCATGTCATGACGGCCGAGTTTCAAGTTCCTTCTCCCCTGGTTCCGACTCGAGAAAATTACTTCGTGAGATACTGCAAGCAGCAGGCAGACCGGAGTTGGGCGGTGGTCGATGTTTCGCTTGATTATTTACGCCCCACACCTACTTCAAGGACTCGAAGAAGACCATCCGGTTGCTTAATCCAAGAACTACCAAATGGTTGCTCAAAGGTGACTTGGGTGGAACATGTAGAAGTGGATGATCGAGCAGTACACAATTTGTACAAACGAGTGGTCTCATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTGATCGACAGTGCCAACGCTTAACCAACTCCTCCTCTACCAACATTGCTGCACTAGACATTTGCGTGGTAACAGGGCAAGAGGGGAGGAAGAGCGTAATGAAGTTAGCAGAGAGAATGGTGAGGAGCTTCTGCAGTGGCGTTGGGGCTGCTACTGCACACAATTGGACTACATTATCCACCATTGATTCCGACGATGTTCGAGTCATGGCGAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTCAATGCAGCAACTTCTTTCTGGATTCCAATTCTCCCCAACAGAGTCTTCCATTTCCTCCGAGATCAAAACACCCGCAATCAGTGGGATATACTTTCAAACGGTGGATTAGTCCAAGAAATGGCTCGCATTGGCAACGATCGAAACCCAGGAAACTGTGTCTCATTACTTCGTGTTAACAGTGCAAATTCAAGTCAGAGCAACATGTTAATACTACAAGAGAGCTGCAGCGACGACATCAGCGGTTCCTACATAATCTATGCCCCAGTGGACACCGTCGCCATGAACATGGTCTTGAGCGGCGGAGACCCTGATTACGTGGCTCTCTTGCCATCCGGATTCGCCATTCTCCCTGATGGGCCGCCCATTGGGGCTGATGGGCCTTCAGGAATTCTCGAATTCGGGTCCGGTGGTTCCTTGTTGACCGTTGCTTTTCAGATATTAGTGGATTCAGCTCCAACTGCCAAATTGTCTCTTGGGTCCGTGGCTACGGTTAACAGCCTCATCAAGTGCACGGTGGAGCGGATTAGAGCTGCACTCATGTGTGACCAACCCATGAATTAA 2214 46.57 MFGAHGFEDHHEDLLLEMTQKNFECELEKFGEDEFESRSVTDAMEAPLGEELCVLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDSQHLRIDNAHLRDEIERLNSSSKYGGKAWGSHSHMVPCGGQLDHLGVGRSSLKPQQADHLLGEMYGGVGETMLKKSVTTEIDKPVIVELAVSAMEEVCRMAQAGEPLWVTGENSMEMLNEDEYLRTYSTRIGPRIVGLSFEASRQTSILAFNHLKLVHVLMDVNQWSTIFCGIVSRALTLEVLSTGVGGDYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQADRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGCSKVTWVEHVEVDDRAVHNLYKRVVSCGLAFGAKRWMATLDRQCQRLTNSSSTNIAALDICVVTGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPILPNRVFHFLRDQNTRNQWDILSNGGLVQEMARIGNDRNPGNCVSLLRVNSANSSQSNMLILQESCSDDISGSYIIYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPPIGADGPSGILEFGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIRAALMCDQPMN 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6601693 6609394 - CrPI670011_03g007780.1 Cre03g0778 492808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0778 737 SUPERFAMILY Bet v1-like 244 473 - -
Cre03g0778 737 Gene3D - 313 473 IPR023393 -
Cre03g0778 737 CDD START_ArGLABRA2_like 248 471 - -
Cre03g0778 737 SUPERFAMILY Bet v1-like 499 727 - -
Cre03g0778 737 Gene3D - 54 135 - -
Cre03g0778 737 Pfam START domain 254 472 IPR002913 GO:0008289(InterPro)
Cre03g0778 737 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre03g0778 737 FunFam Homeobox-leucine zipper protein GLABRA 2 253 471 - -
Cre03g0778 737 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
Cre03g0778 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 732 IPR042160 -
Cre03g0778 737 ProSiteProfiles START domain profile. 244 475 IPR002913 GO:0008289(InterPro)
Cre03g0778 737 FunFam Homeobox-leucine zipper protein HDG1 50 134 - -
Cre03g0778 737 SMART HOX_1 59 122 IPR001356 GO:0003677(InterPro)
Cre03g0778 737 SMART START_1 253 472 IPR002913 GO:0008289(InterPro)
Cre03g0778 737 Coils Coil 112 147 - -
Cre03g0778 737 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677(InterPro)
Cre03g0778 737 CDD homeodomain 60 119 IPR001356 GO:0003677(InterPro)
Cre03g0778 737 Pfam Homeodomain 61 116 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0778 Cre-Chr3:6601693 Cre06g0780 Cre-Chr6:1186091 3.40E-188 dispersed
Cre02g0518 Cre-Chr2:2255819 Cre03g0778 Cre-Chr3:6601693 5.30E-242 wgd
Cre03g0778 Cre-Chr3:6601693 Cre04g1828 Cre-Chr4:36064537 2.50E-255 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53302 PF01852 START 3.30E-48 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0778 K09338 - csv:101212604 1347.41