Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0802 ATGGGGTCGCCTGAAATTACGGATTGGGTGTTCGATTACGGTATGATTGAGGACATTCCTGTCCCCGGTGGTGACCTACCTTGGCTGGATCTTCCCTCTTTCACTTTGCCTTCTTGCGATTTCACTGCATCCTTCAGGGCAGACTTCGATGACCCACTTGGAATGGCAGACGATGTAAAAGAATCTGGGTCCAGGAAAAGGATGAGCTCTGGATCAAATGCATTTGAGTCCAAGGCACATAAAGAAAAAATGAGGAGGGATAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGTTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCAGAAGCTGAAGGAGTCTAATGAGAGTTCTTTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTACGAGACGAAAAACAGAGGCTGAAAGAAGCAAAAGACAGCCTTGAAAAGAAAATGAAGGCCTTCAATACACAACCAACCTTCTTGCCTCACCCTCCTGCAATTCCTGCTGCATTTGCTTCTCCAAATCAGGTTGTTGGGGGGAAATTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCGGGTGCCATTGATACATCACAAGACCATGTTCTTCGGCCACCAGTCGCCTGA 705 45.25 MGSPEITDWVFDYGMIEDIPVPGGDLPWLDLPSFTLPSCDFTASFRADFDDPLGMADDVKESGSRKRMSSGSNAFESKAHKEKMRRDKLNDRFLELNSILNHGRPPKIDKSVILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKNELRDEKQRLKEAKDSLEKKMKAFNTQPTFLPHPPAIPAAFASPNQVVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6767932 6771086 - CrPI670011_03g008020.1 Cre03g0802 492832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0802 234 MobiDBLite consensus disorder prediction 58 82 - -
Cre03g0802 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 136 IPR036638 GO:0046983(InterPro)
Cre03g0802 234 CDD bHLH_AtILR3_like 78 153 - -
Cre03g0802 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983(InterPro)
Cre03g0802 234 SMART finulus 79 130 IPR011598 GO:0046983(InterPro)
Cre03g0802 234 Pfam Helix-loop-helix DNA-binding domain 77 125 IPR011598 GO:0046983(InterPro)
Cre03g0802 234 Coils Coil 121 176 - -
Cre03g0802 234 Gene3D - 76 150 IPR036638 GO:0046983(InterPro)
Cre03g0802 234 PANTHER BHLH TRANSCRIPTION FACTOR 8 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0802 Cre-Chr3:6767932 Cre05g1645 Cre-Chr5:27158309 9.20E-47 dispersed
Cre10g0787 Cre-Chr10:7746780 Cre03g0802 Cre-Chr3:6767932 4.00E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53304 PF00010 HLH 4.20E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0802 - - - 0.0