Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre03g0802 | ATGGGGTCGCCTGAAATTACGGATTGGGTGTTCGATTACGGTATGATTGAGGACATTCCTGTCCCCGGTGGTGACCTACCTTGGCTGGATCTTCCCTCTTTCACTTTGCCTTCTTGCGATTTCACTGCATCCTTCAGGGCAGACTTCGATGACCCACTTGGAATGGCAGACGATGTAAAAGAATCTGGGTCCAGGAAAAGGATGAGCTCTGGATCAAATGCATTTGAGTCCAAGGCACATAAAGAAAAAATGAGGAGGGATAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGTTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCAGAAGCTGAAGGAGTCTAATGAGAGTTCTTTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTACGAGACGAAAAACAGAGGCTGAAAGAAGCAAAAGACAGCCTTGAAAAGAAAATGAAGGCCTTCAATACACAACCAACCTTCTTGCCTCACCCTCCTGCAATTCCTGCTGCATTTGCTTCTCCAAATCAGGTTGTTGGGGGGAAATTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCGGGTGCCATTGATACATCACAAGACCATGTTCTTCGGCCACCAGTCGCCTGA | 705 | 45.25 | MGSPEITDWVFDYGMIEDIPVPGGDLPWLDLPSFTLPSCDFTASFRADFDDPLGMADDVKESGSRKRMSSGSNAFESKAHKEKMRRDKLNDRFLELNSILNHGRPPKIDKSVILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKNELRDEKQRLKEAKDSLEKKMKAFNTQPTFLPHPPAIPAAFASPNQVVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6767932 | 6771086 | - | CrPI670011_03g008020.1 | Cre03g0802 | 492832 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre03g0802 | 234 | MobiDBLite | consensus disorder prediction | 58 | 82 | - | - | |
Cre03g0802 | 234 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 65 | 136 | IPR036638 | GO:0046983(InterPro) | |
Cre03g0802 | 234 | CDD | bHLH_AtILR3_like | 78 | 153 | - | - | |
Cre03g0802 | 234 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 73 | 124 | IPR011598 | GO:0046983(InterPro) | |
Cre03g0802 | 234 | SMART | finulus | 79 | 130 | IPR011598 | GO:0046983(InterPro) | |
Cre03g0802 | 234 | Pfam | Helix-loop-helix DNA-binding domain | 77 | 125 | IPR011598 | GO:0046983(InterPro) | |
Cre03g0802 | 234 | Coils | Coil | 121 | 176 | - | - | |
Cre03g0802 | 234 | Gene3D | - | 76 | 150 | IPR036638 | GO:0046983(InterPro) | |
Cre03g0802 | 234 | PANTHER | BHLH TRANSCRIPTION FACTOR | 8 | 234 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g0802 | Cre-Chr3:6767932 | Cre05g1645 | Cre-Chr5:27158309 | 9.20E-47 | dispersed | |
Cre10g0787 | Cre-Chr10:7746780 | Cre03g0802 | Cre-Chr3:6767932 | 4.00E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53304 | PF00010 | HLH | 4.20E-09 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre03g0802 | - | - | - | 0.0 |