Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0807 ATGTCAGCTTATTTGTGGAAAAGCTTCGACGAGGATGAAGATCGACCCGAGAAGCCGCGGCGATGTGGAGTTACAGAGATGAGAGGCCCTCATTATACTCTTTCGAGCCAAAATGTTATTCAGGAAATTTTCGAGTCTGTGGGTCAATTTGTCGATGGGTTAAAGTTCTCCGGGGGTTCTCACAGCCTATTGCCGAGGGATTTTATGAAAGAGGTGACGGAAATGGCTCATCGACATGACATCTATGTCAGTACGGGTGACTGGGCGGAGCATTTACTACGCAAAGGTCCATCCGGTTTCAAAGAGTATGTGGAGGAATGTAAGCTCTTAGGATTTGACACTATTGAGCTCAACGTGGGATCACTTGAAGTTCCTGAAGAAACTCTTCTGAGATACGTGCGTTTGATTAAGAACGGTGGCCTTAGGGCTAAGCCTCAGTTCGCAGTGAAGTTCAACAAGTCCGACGTTCCCATCAGTGGCAATCGAGCATTTGGAGCTTATATTGTTCCGAGACCACGATCTTCTGAACTTGTAGAAGATGTTGATCTTTTGATCAGAAGGGCTGAGAGATGCCTAGAAGCTGGGGCAGACATGATTATGATTGATGCAGATGATGTCAGTAAACATGCCGATTCTCTTCGAGCAGATATTATTGCCAAGATCATTGGGCGTCTTGGTCTAGAGAAAACGATGTTTGAAGCATCGAATCCCAGAACATCAGAGTGGTTTATCAATCATTACGGTCCAAAGGTGAATCTTTTTGTGGATCACTCTCAAGTTATGGATCTGGAGTGCCTCCGGGGTCGCAACCTGGGTCAATCAGGTGGTGGCCTTTTCGATGTCACAAAGTACGGTGCTAAACCTAATGGAGATATTACTACGGCTTTGGCAAGTGCATGGAGTGAGGCATGTGCGTCTACCACTTCAAGTAAAGTGTTGATTCCAAAAGGAACTTATCAATTAACTCAATCCAATCTTAAAGGCCCTTGCAAAAGTCCTATTGAGGTTCAAATTGAAGGAACATTACAAGCACCGGCCCAACCAAAAGGAGATGGGTTGCTCATTTTAGAATATGTTGATCAATTAACGTTATCAGGTACTGGAGTTTTAGATGGCCAAGGAAAAACAGGTTGGGAAAAGAATGATTGCCATCTTAAGAAAATATGTGCCAAACTTCCTATGAATTTGAAGTTTAATTTCATCACTAATTCATTAGTGAAGGACATAACTTCATTGGATAGCAAGAATTTTCATATCAACCTTTTGGGCTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCACCAGATAATAGTCCCAACACCGATGGAATTCACTTGAGTAGTTCAGAAGCAATTAATATTCTCAATACCAAAATTGCAACCGGAGATGATTGTATATCTGTGGGAGATAGTAACAAACAAATAGCTATTAGTGATGTTACTTGTGGACCGGGACATGGAATTAGCGTTGGAAGTTTGGGTAAATATAGCAAGGAACAAGCTGTGGAAGGAATTACAGTGAAAAAATGCAAATTGATCAATACGTTGAATGGTGTCAGGATCAAAACATGGCCAGATTCTGTCGGCGCATTTCCAGCCACTGACATGCATTTTGAAGACATTGAAATGGTTAACGTTAGCTTTCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAGTGCAACCGAAAGGTTGCATCAAAAATTAAGATCAGCAAAGTTAGTTTCAAGAACATTAAAGGCACCTCAGCAACTCCGGTTGCAGTCAAACTTCTTTGCAGTAAGAGTTTACCATGTGAGGATGTGGAAGTTGCTAATATTGACCTCACTTATAGTGGAAACGAAGGTCCAATTATATCTCAATGTTCGAACGTGAACCCCATCGTTTCTGGAGTCCAAAACCCTCGCATCTGTGCTGAACCTGTGCCGGTCGATTCTCCATCAACTGACTGA 1962 42.41 MSAYLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLSSQNVIQEIFESVGQFVDGLKFSGGSHSLLPRDFMKEVTEMAHRHDIYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSLEVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDVPISGNRAFGAYIVPRPRSSELVEDVDLLIRRAERCLEAGADMIMIDADDVSKHADSLRADIIAKIIGRLGLEKTMFEASNPRTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLGQSGGGLFDVTKYGAKPNGDITTALASAWSEACASTTSSKVLIPKGTYQLTQSNLKGPCKSPIEVQIEGTLQAPAQPKGDGLLILEYVDQLTLSGTGVLDGQGKTGWEKNDCHLKKICAKLPMNLKFNFITNSLVKDITSLDSKNFHINLLGCKNLTFDHVTITAPDNSPNTDGIHLSSSEAINILNTKIATGDDCISVGDSNKQIAISDVTCGPGHGISVGSLGKYSKEQAVEGITVKKCKLINTLNGVRIKTWPDSVGAFPATDMHFEDIEMVNVSFPIIIDQEYCPWNQCNRKVASKIKISKVSFKNIKGTSATPVAVKLLCSKSLPCEDVEVANIDLTYSGNEGPIISQCSNVNPIVSGVQNPRICAEPVPVDSPSTD 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6791159 6799289 + CrPI670011_03g008070.1 Cre03g0807 492837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0807 653 SUPERFAMILY Pectin lyase-like 278 643 IPR011050 -
Cre03g0807 653 Gene3D - 273 648 IPR012334 -
Cre03g0807 653 MobiDBLite consensus disorder prediction 1 20 - -
Cre03g0807 653 ProSitePatterns Polygalacturonase active site. 481 494 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cre03g0807 653 SMART pbh1 451 472 IPR006626 -
Cre03g0807 653 SMART pbh1 504 525 IPR006626 -
Cre03g0807 653 SMART pbh1 424 450 IPR006626 -
Cre03g0807 653 Pfam Glycosyl hydrolases family 28 304 629 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cre03g0807 653 Gene3D Aldolase class I 9 272 IPR013785 -
Cre03g0807 653 Pfam (2R)-phospho-3-sulfolactate synthase (ComA) 14 270 IPR003830 -
Cre03g0807 653 PANTHER - 3 274 IPR052597 -
Cre03g0807 653 SUPERFAMILY (2r)-phospho-3-sulfolactate synthase ComA 13 267 IPR036112 -
Cre03g0807 653 FunFam Pectin lyase-like superfamily protein 269 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0807 Cre-Chr3:6791159 Cre11g0575 Cre-Chr11:2882197 6.30E-194 dispersed
Cre03g0807 Cre-Chr3:6791159 Cre08g0845 Cre-Chr8:21553677 4.90E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0807 - - - 0.0