Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0820 ATGAATCTTCTTCCTCCTAAACGGGCTTTCTTCTTCATTTCGTTGTTTTTGGTAATTTTTGTTGGTAGCCAATTTAGCGTTGGCGTTGGCCTTGAGAATTCGAATTCTACCATTCAAATCATCAAAGATGGAGATCGGTTGGCATCCAGCGACAATAATTTCGTTCTTGGATTCTTCGGTTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTATAATAAAATTCCTCAATTTACCCTCGTTTGGGTTGCAAATAGAAACCAACCCCTTAACGACAACACAGGAACCTTAGCCCTCGACCGCCGTGGAAACCTCCTCCTTTTCACCTCCAAACAAACCATATCTCTTTGGTCTACAAACGCTACCATTCAATCAAACGACGACGTGTTGATTAAGCTTTGGAATACGGGAAATTTCGTCCTGATTGAACGACAAAGCCAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCTTTCTTCCCTACATGAAATTGGGGTTGAACTGGTGGACCAGGATTAACTGGTTCCTAACTTCATGGAAGGCGCAGGACGATCCGGGAACTGGGAACTTCAGTTGTCGGATAGACCCGACAGGGTATCCGCAATTAATTTTGTACAATGGGAATGTTCCGCGGTGGCGGATTGGATCATGGACAGGGCAGAAATGGTCTGGAGTACCTGAAATGACAAGGTCATTTATATTCAACACAACCTACATCGACAACACAGAGGAGATTTCCATAATGGACAGTGTCACAACCGACACGGTTTTAAGCAGCATGAGTCTAGACGAATCCGGTTTGTTGCATCGGTCCATGTGGAATGAACAACAACAAAAGTGGAAAGATTATTGGACGGGTCCGACCGAGTGGTGCGACAGCTACAATAGATGCTATCCAAACACTAACTGTGACCAGTACGACACGGAGCAGTTCTATTGCAAGTGCTTGCCTGGTTTCGAACCACGATCGAACCAAAGTTGGTTACGGAGAGATCCGTCGGGTGGGTGCATCAGGAAGAGGCCCAACGCCATGTGTCGTAGTGGAGAGGGATTTGTGAGGGTGTCACTTGTGAAGGTCCCGGATACGTCGATGGCACGTGCAGATTTGAGTATGAGTTTGGACGCGTGCGCACAAGCATGTGTAAATGATTGTAACTGTACGGCTTACACGAGCGCAAATGAGGCGACGGGGAGCGGGTGCGTGATGTGGTATGGAGATTTGATAGACACACGGACCTTTGCCAACACGGGTCAAGATCTATATGTAAGAGTTGATGCTATTGAATTAGCTCAATATAATCCACAAAATTCAAATCCTCATCCAACAAAGAAGGTGATAGTAATTGTTGTTGTATCTTTTGTTGCATTGGTGTTACTCGTGACCTCACTAATTTGTTTATGGAAAATGATTAGGAAAAGAAGGGAGAGATCGACGAGTCTATCTAATAACTTTGAGGACTCTCCAAATTCAAAGGAATTTGATGAAAGTAGAACAAATTCAGATTTGCCTATATTTGACTTGTTGACTATAACAAAGGCAACCGATGATTTTTCCTTTAATAACAAGCTTGGAAAAGGTGGCTTTGGCACAGTTTATAAGGGCAAGCTTATGAATGGAGAGGAAATTGCAGTTAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACATTAATTGCAAAGCTCCAACATAGAAACCTCGTCAGAATTTTAGGCTATTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTACCAAACAAAAGCTTGGACTATTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTCAATTGGAAAAAACGTTTTGAAATTATATGTGGCATCGCACGAGGAATCTTATATCTTCATCAAGATTCAAGATTGAAAATCATTCATCGAGATTTGAAGGCCAGCAATATACTACTAGATGCTGATTTGAATCCCAAAATCGCAGATTTTGGCATGGCAAGGATAGTTGGCCAAGATCAAATTCAAGCGAACACAAATCGCATTGTGGGAACATATGGTTATATGTCACCAGAGTATGCAATGGAAGGCCTATTTTCAGTGAAATCCGATGTTTATAGCTTTGGAGTTTTGGTGCTAGAGGTGATTACATGCAAAAAGAACACTGGCTGTGTATCCAACTACGTAAATTTGGTTGGACAAGTTTGGGAGCTCTGGAAATTGGACAATGCAATGGAATTAGTGGACTCAAGTTTGGAAGAAGGATCAAGTTGTGAATACGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGTGTTCAAGAGGATCCGACTAACCGTCCGACCATGTCGAATGTGGTTTTCATGTTGGAGAATGAAGTGAGTCTTCCTTCTCCAAAGAAACCTGCTTTCATTTTAAAGAGGAAAAGCAACCATGGAGATCCATCCACCAATACTGAAGGAGCCAACTCCAGTACTACTGAGGGAGCCAACTCTCTAAATGATCTAACAATGTCCATAATCGATGCTCGTTAA 2541 42.23 MNLLPPKRAFFFISLFLVIFVGSQFSVGVGLENSNSTIQIIKDGDRLASSDNNFVLGFFGFNNSTTRRYVGIWYNKIPQFTLVWVANRNQPLNDNTGTLALDRRGNLLLFTSKQTISLWSTNATIQSNDDVLIKLWNTGNFVLIERQSQKVIWQSFDYPSHVFLPYMKLGLNWWTRINWFLTSWKAQDDPGTGNFSCRIDPTGYPQLILYNGNVPRWRIGSWTGQKWSGVPEMTRSFIFNTTYIDNTEEISIMDSVTTDTVLSSMSLDESGLLHRSMWNEQQQKWKDYWTGPTEWCDSYNRCYPNTNCDQYDTEQFYCKCLPGFEPRSNQSWLRRDPSGGCIRKRPNAMCRSGEGFVRVSLVKVPDTSMARADLSMSLDACAQACVNDCNCTAYTSANEATGSGCVMWYGDLIDTRTFANTGQDLYVRVDAIELAQYNPQNSNPHPTKKVIVIVVVSFVALVLLVTSLICLWKMIRKRRERSTSLSNNFEDSPNSKEFDESRTNSDLPIFDLLTITKATDDFSFNNKLGKGGFGTVYKGKLMNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDYFIFDESKRALLNWKKRFEIICGIARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIVGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEVITCKKNTGCVSNYVNLVGQVWELWKLDNAMELVDSSLEEGSSCEYEIMRCLQIGLLCVQEDPTNRPTMSNVVFMLENEVSLPSPKKPAFILKRKSNHGDPSTNTEGANSSTTEGANSLNDLTMSIIDAR 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6960579 6965134 - CrPI670011_03g008200.1 Cre03g0820 492850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0820 846 Gene3D - 32 156 IPR036426 -
Cre03g0820 846 Pfam D-mannose binding lectin 81 185 IPR001480 -
Cre03g0820 846 ProSiteProfiles Bulb-type lectin domain profile. 32 156 IPR001480 -
Cre03g0820 846 CDD STKc_IRAK 528 794 - -
Cre03g0820 846 ProSiteProfiles Protein kinase domain profile. 522 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0820 846 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524(InterPro)
Cre03g0820 846 MobiDBLite consensus disorder prediction 813 840 - -
Cre03g0820 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 598 800 - -
Cre03g0820 846 SMART blect_4 38 159 IPR001480 -
Cre03g0820 846 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544(InterPro)
Cre03g0820 846 CDD PAN_AP_plant 351 429 - -
Cre03g0820 846 Gene3D Transferase(Phosphotransferase) domain 1 598 801 - -
Cre03g0820 846 Gene3D Phosphorylase Kinase; domain 1 496 597 - -
Cre03g0820 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 804 - -
Cre03g0820 846 SMART ntp_6 351 429 IPR003609 -
Cre03g0820 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 156 - -
Cre03g0820 846 CDD B_lectin 39 159 IPR001480 -
Cre03g0820 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 222 IPR036426 -
Cre03g0820 846 ProSiteProfiles PAN/Apple domain profile. 350 430 IPR003609 -
Cre03g0820 846 SMART serkin_6 522 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0820 846 MobiDBLite consensus disorder prediction 808 846 - -
Cre03g0820 846 PIRSF SRK 3 846 IPR024171 GO:0004674(InterPro)
Cre03g0820 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 487 597 - -
Cre03g0820 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0820 846 Pfam Protein tyrosine and serine/threonine kinase 523 789 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0820 846 MobiDBLite consensus disorder prediction 483 502 - -
Cre03g0820 846 SUPERFAMILY Protein kinase-like (PK-like) 498 792 IPR011009 -
Cre03g0820 846 Pfam PAN-like domain 350 415 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0820 Cre-Chr3:6960579 Cre03g0824 Cre-Chr3:7004790 1.40E-190 dispersed
Cre03g0820 Cre-Chr3:6960579 Cre03g0821 Cre-Chr3:6972309 0.00E+00 tandem
Cre10g0828 Cre-Chr10:8941168 Cre03g0820 Cre-Chr3:6960579 2.50E-184 wgd
Cre02g0483 Cre-Chr2:2021305 Cre03g0820 Cre-Chr3:6960579 1.20E-120 wgd
Cre03g0820 Cre-Chr3:6960579 Cre04g1858 Cre-Chr4:36262618 1.40E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63951 PF07714 PK_Tyr_Ser-Thr 1.10E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0820 - - - 0.0