Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0821 ATGAATCCTCTTCTTCCTAAAAGGGCCGTCTTCCTCATTTCGTTGTATTTGATAATTTTTGTGGGCAGCCATTTGAGCGTTGGCCTTGGGAATTCGAGTTCTACCATTCAAATCATCAAAGATGGAGATCGGTTGGTATCCAGCAACAAGAATTTCGCTCTTGGATTCTTCAGTTTCGACAATTCCACAACTCGCCGATATGTCGGAATTTGGTACAACAAAATTCCTCAACTAACCCTCGTTTGGGTTGCCAATAGAAACCAACCCCTCAACGACACCTCAGGAACCTTAGCCCTCGACCGTCATGGAAACGTCGTGGTTTTTACCCCAACACAAACTGTATCTCTTTGGTCTACGAACGCTTCCATCCAATCAAATAACGACGTGTCGATTGAGCTTTGGAATACGGGAAATCTCGCCCTGATTGGACGACGAAGCCAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCCTTCTTCCCAACATGAAAATGGGAGTGAACCGGCGGACCGGGTTCAGCTGGTTCCTAACTTCATGGAAGGCGCAAGATGATCCGGGAACCGGGAACTTTAGTTGCCGGATTGACCCGACCGGGTATCCGCAACTGATTTTGTACGACGGGGATGCTCCACGGTGGCGGGGAGGATCGTGGACGGGGCGAAGATGGACCGGAGTACCTGAAATGACAAGGTCATTTATAATCAACACATCATATGTGGACAACAGTGAAGAGATTTCCTTAACAAACGGTGTAACGGTGGACACGGTTTTAATGAGAATGACTCTAGATGAATTCGGTTTGGTGCATCGGTCCACATGGAACGAAGAAGAGAAAAAGTGGATTGAATTTTGGTCAGCTCCAATCGAATGGTGTGACAGTTACAACCGGTGCGGTTTGAACAGCAACTGTGACCCATACAACGCAGATCAGTTCCAGTGCAAGTGCTTACCTGGGTTCGAACCACGGTCGAGCCAAAATTGGTTCTTAAGAGATCCGTCGGGTGGGTGCATCAGGAAGAGGTCGAACGCCACGTGTCGGAGTGGAGAGGGTTTTGTGAAAGTGTCACGTGTGAAGGTGCCAGATACATCGACGGCAAGTGTGGATAAGAGTATGAGTTTAGAAGCGTGTGAACGAGGGTGTGTAAATGATTGTAATTGCACGGCTTACACAAGTGCAAATGAGACGACGGGGACCGGGTGCATGACGTGGTATGGAGATTTGGTTGACACGCGGACCTATGCCCACGTGGGTCAAGATCTTTATGTAAGGGTTGATGCTATTGAATTAGCTCAATACGCACAAAATTCAATTCGCCATCCAACGAAGAAGGTGATAGCAACTGTTGTTGTGTCTTTTGTTGCATTGGTGCTACTCGTGACCTCGCTAATTTATTTATGGGAAACAACTAGAAAAAGAAGGGACAGATCAACAAGCTTATCTCTTAACTTTGGAGAATTTCCAAATCTGAAGGTATTTGATGAAAGTAGAACAAGTTCAGATTTGCCTGTATTTGACTTGTTGACCATAGCAAAGGCAACAGACAATTTTTCAGTTATTAACAAGCTTGGAGAAGGTGGCTTTGGCGCAGTGTATAAGGGCAAACTTACAAATGGAGAGGAAATTGCTGTTAAAAGGTTGGCTAAGAATTCAGGGCAAGGCGTTGGAGAGTTCAAGAATGAAGTAAATTTAATTGCAAAACTCCAACATAGAAACCTCGTCAGAATTTTAGGCTACTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGCAAGAGGGTTTTGCTTGATTGGAAAAGACGTTTTGAAATTATATGTGGAATTGCACGAGGGATCTTATATCTTCATCAAGATTCTAGATTGAAAATTATTCATCGAGATTTGAAAGCGAGCAATATACTTCTGGATGTTGATTTGAACCCCAAAATAGCAGATTTTGGCATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAACACAAATCGCATCGTGGGAACATACGGCTATATGTCACCGGAGTATGCAATGGAAGGCCTATTTTCAGTGAAATCAGATGTATATAGCTTTGGAGTGTTGATACTAGAGATGATTACGGGCAAAAAGAACACTAACTATGATTCCTCCCACTTGAACTTGGTTGGACATGTCTGGGAGCTCTGGAAATTGGACAATGTAATGGAATTAGTCGACTCAAGTTTGGAAGAATCAAGTTGTGGATATGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGTGTCCAGGAGGATCCGACAGATCGTCCGACCATGTCGACTGTCATCTTCATGTTGGGGAATGAAGTTGTGCAGAATTTCGGTGAAGCAGGAGGTCATGGGTTGTTGGAGCTGATTTTGAGGGTAACAGCAGAGGTAATTTCTCAAGCCCAGCTTGGTGCTCATGCCCTCTTGCCCTGCTGCCTTGTGTGCGTGGGAAGAGTCCCTCAGCCATGTTGGTGA 2529 44.29 MNPLLPKRAVFLISLYLIIFVGSHLSVGLGNSSSTIQIIKDGDRLVSSNKNFALGFFSFDNSTTRRYVGIWYNKIPQLTLVWVANRNQPLNDTSGTLALDRHGNVVVFTPTQTVSLWSTNASIQSNNDVSIELWNTGNLALIGRRSQKVIWQSFDYPSHVLLPNMKMGVNRRTGFSWFLTSWKAQDDPGTGNFSCRIDPTGYPQLILYDGDAPRWRGGSWTGRRWTGVPEMTRSFIINTSYVDNSEEISLTNGVTVDTVLMRMTLDEFGLVHRSTWNEEEKKWIEFWSAPIEWCDSYNRCGLNSNCDPYNADQFQCKCLPGFEPRSSQNWFLRDPSGGCIRKRSNATCRSGEGFVKVSRVKVPDTSTASVDKSMSLEACERGCVNDCNCTAYTSANETTGTGCMTWYGDLVDTRTYAHVGQDLYVRVDAIELAQYAQNSIRHPTKKVIATVVVSFVALVLLVTSLIYLWETTRKRRDRSTSLSLNFGEFPNLKVFDESRTSSDLPVFDLLTIAKATDNFSVINKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVNLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDSFIFDESKRVLLDWKRRFEIICGIARGILYLHQDSRLKIIHRDLKASNILLDVDLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLILEMITGKKNTNYDSSHLNLVGHVWELWKLDNVMELVDSSLEESSCGYEIMRCLQIGLLCVQEDPTDRPTMSTVIFMLGNEVVQNFGEAGGHGLLELILRVTAEVISQAQLGAHALLPCCLVCVGRVPQPCW 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6972309 6978897 - CrPI670011_03g008210.1 Cre03g0821 492851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0821 842 CDD STKc_IRAK 525 788 - -
Cre03g0821 842 Pfam D-mannose binding lectin 79 183 IPR001480 -
Cre03g0821 842 Gene3D - 30 154 IPR036426 -
Cre03g0821 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 32 794 - -
Cre03g0821 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 488 594 - -
Cre03g0821 842 PIRSF SRK 3 797 IPR024171 GO:0004674(InterPro)
Cre03g0821 842 ProSiteProfiles Bulb-type lectin domain profile. 30 154 IPR001480 -
Cre03g0821 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 188 IPR036426 -
Cre03g0821 842 Pfam PAN-like domain 348 413 IPR003609 -
Cre03g0821 842 Gene3D Transferase(Phosphotransferase) domain 1 595 797 - -
Cre03g0821 842 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524(InterPro)
Cre03g0821 842 CDD EGF_CA 294 326 - -
Cre03g0821 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0821 842 ProSiteProfiles Protein kinase domain profile. 519 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0821 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 154 - -
Cre03g0821 842 Pfam Protein tyrosine and serine/threonine kinase 521 785 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0821 842 SMART blect_4 36 157 IPR001480 -
Cre03g0821 842 CDD PAN_AP_plant 347 427 - -
Cre03g0821 842 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544(InterPro)
Cre03g0821 842 CDD B_lectin 37 157 IPR001480 -
Cre03g0821 842 SUPERFAMILY Protein kinase-like (PK-like) 496 788 IPR011009 -
Cre03g0821 842 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Cre03g0821 842 SMART ntp_6 349 427 IPR003609 -
Cre03g0821 842 SMART serkin_6 519 787 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0821 842 Gene3D Laminin 294 342 - -
Cre03g0821 842 Gene3D Phosphorylase Kinase; domain 1 494 594 - -
Cre03g0821 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 795 - -
Cre03g0821 842 ProSiteProfiles EGF-like domain profile. 290 328 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0821 Cre-Chr3:6972309 Cre03g0824 Cre-Chr3:7004790 9.60E-187 dispersed
Cre03g0820 Cre-Chr3:6960579 Cre03g0821 Cre-Chr3:6972309 0.00E+00 tandem
Cre03g0821 Cre-Chr3:6972309 Cre03g0822 Cre-Chr3:6988872 9.90E-184 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63952 PF07714 PK_Tyr_Ser-Thr 5.80E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0821 - - - 0.0