Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0824 ATGCTTATGTGTTTTCTTCCTTGCTCACTCACTCCTGTTCGTGCTCATGCTCGTTGCTTCGAAAAAAAGGTGCTCGCAAATGGTCAAAATGACAAACTACATGCTTCGAATTTGAAAGAAGCCATGGGAGAACTGATTTACAGGTGCAAGCTTTCGGCTTTTCTCTTTCTCTTAACGATCATAGCTCTGTTTCCAACAAAATCATACGGAAATGACAGCATAAAAACAGGGGAATCCATCAATGGAAGTACCCAGATTTTAATTTCATCTGGACAAAACTTCGTGTTGGGAATTTTCACTCCCCAAGGCTCAAAATTTCAGTATTTGGGAATATGGTTCAACAACATCCCACAAACTATCGTGTGGATCGCAAACAGAGACAACCCACTTGTAAATTCCTCTGGAAAATTAGAATTCAGAAGAGGAAACATCGTTCTTCTCAACGAAACAGATGGAATTTTATGGTCTTCCACTTTTCCACGATCATCGAAAGAAACAGTAGCTCAGCTGCTAGATACAGGTAATTGGGTCTTAAGAGAATCTGGGTCTGAAGATTATCTATGGCAGAGTTTCGATTACCCCTCCGATACTCTGTTACCTGGGATGAAACTGGGTTGGAACTCCAAAACCGGTCTAAACCGGAAGTTAAGATCGTGGAAAAGCTCAAACGATCCGTCGTTTGGGGACTTCACTTACAGTGTGGATCTTAGTGGGCTTCCCCAATTGGTAACTCGCAAAGGACCCATCCTAAAGTACCGGGGCGGCCCATGGTACGGTAATAGGTTTAGCGGCAGCGCTCCTCTCAGAGATACCGCAGTTTATTCTCCGAAGTTTGAATATACAGCCGACGAAGTAACTTATTCAATCGTTGCGACGAATAGTCTCATTGTAAAACTTGCACTGGACGCGACTGGAATATTGCATCAAGTTTATTGGGACGATGGTAGAAAAGATTGGTATCCTCTGTATACTTTGCCAGGGGATCGCTGCGACGACTATGGACTTTGCGGGAATTTTGGTATTTGTACCTTTTCCCTCACTCCACAATGCAATTGCATGGTTGGGTTTGAACCCAAATCGCCTGATGATTGGAAAAGGTTTAGATGGTCAGATGGCTGCGTTAGAAAGGACAATCAAACCTGTAGAAATGGAGAAGGGTTTAAAAGAATCCGCAGTGTGAAATTGCCAGATTCTTCAGGGTATTTGGTGAATGTTAATACAAGCATTCATGACTGCGAGGCAGCGTGCTTGAGCAACTGCTCTTGCTTGGCTTATGGAATAATGGAACTTTCTACAGGTGGCTATGGCTGTGTCACTTGGTTTCAGAAATTGATTGATGCTAGATTTGTTCCTGAAAATGGACAGGATATCTATGTGAGAGTGGCGGCTTCTGAATTAGACTCGAGCAACAGGAAGCTTGTAATTGCTGTTAGTGTGTCTGTGGCTTCACTGATAGCCTTCTTGGTTTTAGTGGTTTGTTTCATCCTGTGGCGTAGAAGGAAAGTTAGAGGCGAAATTCAAAGTCAAGAGAATGAGGTTGAGATGCCACTCTATGATTTTACCACGATTGAGATTGCCACAAATAATTTTTCTTTTTCCAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTCCATGTGGGCAAGAAATTGCAGTAAAAAGGTTGGCAGAGGGCTCTGGTCAAGGACAAATCGAGTTCAAAAATGAGGTTTTATTGATTTCCCAACTTCAACATCGAAATCTTGTCAAGCTGCTTGGTTTCTGCATTCATCAAGAACAAACATTACTAGTTTATGAATACATGCCAAACAAAAGTCTAGACTACTTTCTCTTTGATGATGAGGGGCGATCTTTACTCAATTGGCAAAAGAGATTGGACATCATAATTGGAATAGCTCGAGGGCTTCTTTATCTTCACAGAGATTCTAGACTTAGAATCATACATCGGGATCTTAAAGTGAGTAATATATTACTGGATAATGAAATGAATCCAAAAATTTCAGACTTTGGAATGGCACGAATGTTTCCCGAGGACCAAACTATGACAAAAACCCAAAGAGTTGTTGGAACCTTTGGCTATATGTCTCCTGAATATGCACTCGATGGATGTTTTTCATTGAAATCAGACGTTTTTAGCTTTGGAGTTATTCTTTTGGAAATAGTAAGTGGTAAGAAGAACAGAGGCTTCTTCCATACAGATCATCAACTTAATCTTCTTGGACATGCATGGAAGCTTTGGGATGAAGGAAATGCTTTGGAATTAGTGGATGAAACATTGGAGGATCAATTCCAACCTCACGAAGCACTGCAATGCATTCAAGTTGGGCTTTTGTGTGTTCAACAGAATCCAGACGAAAGACCAACTATGTGGTCAGTACTTTCAATGTTAGAGAGTGAAAATATGTTATTATCTCCTCCTCAACAACCTGGATTTTACACCGAACGAATGGTTTCGAAGACGGATAAATCGTCGACTGAGATCTCGTCTTCCAATGAAGTGACCGTTACACTACTACAAGCTCGTTAG 2541 41.36 MLMCFLPCSLTPVRAHARCFEKKVLANGQNDKLHASNLKEAMGELIYRCKLSAFLFLLTIIALFPTKSYGNDSIKTGESINGSTQILISSGQNFVLGIFTPQGSKFQYLGIWFNNIPQTIVWIANRDNPLVNSSGKLEFRRGNIVLLNETDGILWSSTFPRSSKETVAQLLDTGNWVLRESGSEDYLWQSFDYPSDTLLPGMKLGWNSKTGLNRKLRSWKSSNDPSFGDFTYSVDLSGLPQLVTRKGPILKYRGGPWYGNRFSGSAPLRDTAVYSPKFEYTADEVTYSIVATNSLIVKLALDATGILHQVYWDDGRKDWYPLYTLPGDRCDDYGLCGNFGICTFSLTPQCNCMVGFEPKSPDDWKRFRWSDGCVRKDNQTCRNGEGFKRIRSVKLPDSSGYLVNVNTSIHDCEAACLSNCSCLAYGIMELSTGGYGCVTWFQKLIDARFVPENGQDIYVRVAASELDSSNRKLVIAVSVSVASLIAFLVLVVCFILWRRRKVRGEIQSQENEVEMPLYDFTTIEIATNNFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQIEFKNEVLLISQLQHRNLVKLLGFCIHQEQTLLVYEYMPNKSLDYFLFDDEGRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFPEDQTMTKTQRVVGTFGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTDHQLNLLGHAWKLWDEGNALELVDETLEDQFQPHEALQCIQVGLLCVQQNPDERPTMWSVLSMLESENMLLSPPQQPGFYTERMVSKTDKSSTEISSSNEVTVTLLQAR 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7004790 7010953 - CrPI670011_03g008240.1 Cre03g0824 492854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0824 846 SUPERFAMILY Protein kinase-like (PK-like) 513 823 IPR011009 -
Cre03g0824 846 SMART ntp_6 382 461 IPR003609 -
Cre03g0824 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 120 225 IPR036426 -
Cre03g0824 846 ProSiteProfiles Protein kinase domain profile. 530 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0824 846 Pfam Protein tyrosine and serine/threonine kinase 531 800 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0824 846 SMART blect_4 71 194 IPR001480 -
Cre03g0824 846 CDD PAN_AP_plant 378 462 - -
Cre03g0824 846 CDD B_lectin 80 194 IPR001480 -
Cre03g0824 846 ProSiteProfiles EGF-like domain profile. 326 362 IPR000742 -
Cre03g0824 846 ProSiteProfiles Bulb-type lectin domain profile. 71 191 IPR001480 -
Cre03g0824 846 Gene3D Transferase(Phosphotransferase) domain 1 606 809 - -
Cre03g0824 846 Pfam S-locus glycoprotein domain 252 360 IPR000858 GO:0048544(InterPro)
Cre03g0824 846 Pfam PAN-like domain 381 446 IPR003609 -
Cre03g0824 846 Gene3D Phosphorylase Kinase; domain 1 495 605 - -
Cre03g0824 846 Gene3D - 67 191 IPR036426 -
Cre03g0824 846 ProSiteProfiles PAN/Apple domain profile. 381 462 IPR003609 -
Cre03g0824 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 606 809 - -
Cre03g0824 846 PIRSF SRK 44 846 IPR024171 GO:0004674(InterPro)
Cre03g0824 846 CDD STKc_IRAK 536 802 - -
Cre03g0824 846 SMART serkin_6 530 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0824 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 59 815 - -
Cre03g0824 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0824 846 Pfam Domain of unknown function (DUF3403) 803 846 IPR021820 GO:0004674(InterPro)
Cre03g0824 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 497 605 - -
Cre03g0824 846 Pfam D-mannose binding lectin 119 220 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0820 Cre-Chr3:6960579 Cre03g0824 Cre-Chr3:7004790 1.40E-190 dispersed
Cre03g0821 Cre-Chr3:6972309 Cre03g0824 Cre-Chr3:7004790 9.60E-187 dispersed
Cre03g0822 Cre-Chr3:6988872 Cre03g0824 Cre-Chr3:7004790 0.00E+00 dispersed
Cre03g0824 Cre-Chr3:7004790 Cre05g1675 Cre-Chr5:27974467 7.80E-213 dispersed
Cre03g0823 Cre-Chr3:6996654 Cre03g0824 Cre-Chr3:7004790 0.00E+00 tandem
Cre03g0824 Cre-Chr3:7004790 Cre03g0825 Cre-Chr3:7011824 6.10E-258 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63955 PF07714 PK_Tyr_Ser-Thr 3.70E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0824 - - - 0.0