Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g0829 | ATGAATTCAAGCTTTTCCAGTCTTTTTCTTTTTCTTCTTCTTCTTTCATTAATTACATGCTTCTCTTCAAGGTTTTGCTATGGCAGCGATACAATTACATCAACTGATTTCATCAAATACCCTGCAACCAAAATTTCCAATGCCAACTCCTTCCAATTGGGCTGGTTCTCACCTATTAATTCCACAGCTCAATACGTCGGAATTTGGTACCATCAAGTTTCCCTAAAAACTATAGTATGGGTTGCTAACAAAGACACCCCTCTCAACAATACTTCCGGAATTTTCACCATCTCCAACGATGGAAATCTTGTGATCTTAGACGAAAACAACACCATCATCTGGTCTTCAAATGTTACTTCTCCTACAGTCAACACAACCGCCCGAATTCTAGATTCAGGCAACCTTGTCTTGGAAGATCCTGCTTCCGGATTGGTTATTTGGGAGAGTTTCAAACACCCTTCCAATATATTCTTGCCTTCCATGGAGCTTGTCACAAACAAAAGAACCCAAGACAAGCTTGAAATTACTTCATGGAAAACCCCTTCCGATCCATCTACAGGTAACTTTTCTTTAGCGTTGGATGTTGTTAATATTCCTGAAGCTGTGATTTGGAATAATGGAGGTAACCCATATTGGAGATCTGGTCCATGGAACGGTCATACTTTTATTGGAATACCCGAAATGATCTCTGTTTATCTCATTGGGTTTAATCTTGCTATCAAAGACCAAGTTTGTTCTTTCTCAGTTTCTTACCATAACGACAATCAATTACTTTATAACATACGATTAAGCCCAAAAGGGAATCTAGTGCAGCAGTACTGGAATTCTTCGAAGAAAAATTGGGTTGGGACTTGGTCGGCTTTGAAAACACAATGCGATTATTACGGTGTTTGTGGTGCGTTTGGGCTCTGTAATGGCAAAGCGTCCCCTGTTTGCAGCTGTTTAACAGGGTTTAAACCAAAGGATGAAAAGGAATGGAAACGAGGGAATTGGAGTAATGGGTGTGTGAGAATTACGGCATTGCAGTGTGAGAAATCCAACAACCCCAACACCAGCGGTGAGGAAGATGGGTTTCTAAAAGTGGAATTTGTTAAAGTTCCATTTTTCTCAGAGTGGTCAAATTCCTCTACTTCAGCGGATAATTGCAAACAAAAGTGTTTTGAGAATTGCTTGTGTAGTGCTTATGCGTATGAAAATGGTATTGGTTGTATGCTATGGAGAAAAGACTTAATTGATGTACAGAAATTCGAAAGCCTTGGAGCCAATCTTTACCTTCGACTGGCTCATGCAGACTTGCAAACAATTAATGATGTAAAAAGCAAGCGTGGAATTATTACAGTTATTGTGCTACTAGCAACGCTTATGATCTTCATCATTGCCATATACTTCCGGTGGAGATGGAAGGCTAGCCAAATTGAGGAGTATAACAAAAACGGGAAAAGATTGAATTTGAGAAGGGATGACATGATTAGGGACAAAAGTGGCTTTGGTCCCGTATATAAGGGAAGATTGCTAGATGGACAAGAAATAGCAATAAAAAGGCTTTCAAGAGCTTCTAGTCAAGGGTATGAGGAATTTATAAATGAAGTGATGGTGATTTCCAAACTACAACATAGAAATCTTGTACAGCTTCTCGGTTGTTGCATCGAAGAAGAAGAGAAGATGCTAATATACGAGTACATGCCCAACCTAAGTTTGGATGCATTCATCTTTGACCCCAATAAACAAAAACTCTTGAATTGGAGAAAAAGATTTAACATCATCGATGGGATTGCTCGAGGTCTTCTTTACCTTCATAGAGATTCAAGATTGAGAATTATTCATAGGGATTTGAAGGCAAGTAACATTTTATTAGACAAAGACATGAATCCTAAAATTTCAGACTTTGGTATGGCCAGAATATTTGGGAGTAATGAAGTGCAAGCCAATACTATAAGGGTTGTTGGAACTTATGGATATATGTCGCCCGAGTATGCAATGCAAGGTCAATTTTCGGAGAAATCAGATGTTTTTAGTTTTGGAGTTTTATTACTTGAAATTGTAAGTGGGAGAAGAAACACAGGATTCAACCGCCATGAACACGCTTTAAGCTTATTGGAATTTGCATGGAAGTTGTGGATAGAAGACAATCTTATTACTTTGATCGATCCCACAATGTATGAATTGTGTTATCAATCAGAGATTTTTCGGTGCATCCAAGTAGGACTCTTATGTGTTGAAGAATCTATAAATGATAGACCAAATGTTGTTACAATTATTTCAATGCTCAACAGTGAAATTTTGAATATTCCTTTTCCAAAGCAACCTAGCTTTATTGGTAGACCAACTCAGAGTAATGTAAGGATGTCTCGACAATATCAAAATAAATATACTATAAATAGTCTTACGCTTACCTCAGTTAGAGGTCGATAA | 2412 | 38.02 | MNSSFSSLFLFLLLLSLITCFSSRFCYGSDTITSTDFIKYPATKISNANSFQLGWFSPINSTAQYVGIWYHQVSLKTIVWVANKDTPLNNTSGIFTISNDGNLVILDENNTIIWSSNVTSPTVNTTARILDSGNLVLEDPASGLVIWESFKHPSNIFLPSMELVTNKRTQDKLEITSWKTPSDPSTGNFSLALDVVNIPEAVIWNNGGNPYWRSGPWNGHTFIGIPEMISVYLIGFNLAIKDQVCSFSVSYHNDNQLLYNIRLSPKGNLVQQYWNSSKKNWVGTWSALKTQCDYYGVCGAFGLCNGKASPVCSCLTGFKPKDEKEWKRGNWSNGCVRITALQCEKSNNPNTSGEEDGFLKVEFVKVPFFSEWSNSSTSADNCKQKCFENCLCSAYAYENGIGCMLWRKDLIDVQKFESLGANLYLRLAHADLQTINDVKSKRGIITVIVLLATLMIFIIAIYFRWRWKASQIEEYNKNGKRLNLRRDDMIRDKSGFGPVYKGRLLDGQEIAIKRLSRASSQGYEEFINEVMVISKLQHRNLVQLLGCCIEEEEKMLIYEYMPNLSLDAFIFDPNKQKLLNWRKRFNIIDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGSNEVQANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIVSGRRNTGFNRHEHALSLLEFAWKLWIEDNLITLIDPTMYELCYQSEIFRCIQVGLLCVEESINDRPNVVTIISMLNSEILNIPFPKQPSFIGRPTQSNVRMSRQYQNKYTINSLTLTSVRGR | 803 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 7042765 | 7045845 | + | CrPI670011_03g008290.1 | Cre03g0829 | 492859 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g0829 | 803 | ProSiteProfiles | PAN/Apple domain profile. | 343 | 428 | IPR003609 | - | |
| Cre03g0829 | 803 | Pfam | S-locus glycoprotein domain | 212 | 321 | IPR000858 | GO:0048544(InterPro) | |
| Cre03g0829 | 803 | SMART | blect_4 | 35 | 153 | IPR001480 | - | |
| Cre03g0829 | 803 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 17 | 769 | - | - | |
| Cre03g0829 | 803 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 606 | 618 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre03g0829 | 803 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 561 | 764 | - | - | |
| Cre03g0829 | 803 | CDD | STKc_IRAK | 493 | 757 | - | - | |
| Cre03g0829 | 803 | CDD | PAN_AP_plant | 339 | 428 | - | - | |
| Cre03g0829 | 803 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 25 | 150 | - | - | |
| Cre03g0829 | 803 | Gene3D | Phosphorylase Kinase; domain 1 | 492 | 561 | - | - | |
| Cre03g0829 | 803 | PIRSF | SRK | 493 | 803 | IPR024171 | GO:0004674(InterPro) | |
| Cre03g0829 | 803 | PIRSF | SRK | 1 | 494 | IPR024171 | GO:0004674(InterPro) | |
| Cre03g0829 | 803 | Pfam | PAN-like domain | 353 | 413 | IPR003609 | - | |
| Cre03g0829 | 803 | FunFam | Uncharacterized protein | 496 | 560 | - | - | |
| Cre03g0829 | 803 | Pfam | D-mannose binding lectin | 77 | 179 | IPR001480 | - | |
| Cre03g0829 | 803 | Gene3D | Transferase(Phosphotransferase) domain 1 | 562 | 762 | - | - | |
| Cre03g0829 | 803 | SMART | serkin_6 | 495 | 761 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cre03g0829 | 803 | SMART | ntp_6 | 353 | 427 | IPR003609 | - | |
| Cre03g0829 | 803 | SUPERFAMILY | Protein kinase-like (PK-like) | 494 | 756 | IPR011009 | - | |
| Cre03g0829 | 803 | Pfam | Protein tyrosine and serine/threonine kinase | 495 | 687 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre03g0829 | 803 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 77 | 219 | IPR036426 | - | |
| Cre03g0829 | 803 | CDD | B_lectin | 46 | 153 | IPR001480 | - | |
| Cre03g0829 | 803 | Gene3D | - | 26 | 151 | IPR036426 | - | |
| Cre03g0829 | 803 | ProSiteProfiles | Bulb-type lectin domain profile. | 29 | 150 | IPR001480 | - | |
| Cre03g0829 | 803 | ProSiteProfiles | Protein kinase domain profile. | 485 | 761 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g0827 | Cre-Chr3:7028933 | Cre03g0829 | Cre-Chr3:7042765 | 7.20E-275 | dispersed | |
| Cre03g0829 | Cre-Chr3:7042765 | Cre03g0831 | Cre-Chr3:7064430 | 3.70E-305 | dispersed | |
| Cre03g0828 | Cre-Chr3:7036207 | Cre03g0829 | Cre-Chr3:7042765 | 0.00E+00 | tandem | |
| Cre03g0829 | Cre-Chr3:7042765 | Cre03g0830 | Cre-Chr3:7052421 | 1.50E-301 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 63960 | PF07714 | PK_Tyr_Ser-Thr | 2.90E-44 | CL0016 | Cre | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g0829 | - | - | - | 0.0 |