Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre03g0830 | ATGAGAAAATTAAGACATGCAATTTCTCTTCTCCTCCTTCTTTCATTGACATGCTTCTCTTCAAGATTTTGCTATGGCGACGATACGATTACATCAACAAATTTCATCAAAGACCCTGCAACTATTGTATCCAATGGCAGTGTCTTCAAATTGGGATTCTTCACACCTTTAAATTCTACCCACAGATATGTTGGAATTTGGTTTGACAAAATTTCTCCACAAACCATAGCATGGGTTGCAAACAGAGACAGCCCTCTGAATGATACTTCTGGGATTTTCACTATTTCCAAGGATGGGAATCTTGTGGTCTTAGATTCAAACAACACCATCCTTTGGTCTTCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCAACCAACAACACAATCGCTCAAATTCTAGATTCTGGAAACTTGGTTTTGAAAGATACTACTTCCGGGGTTATTATATGGGAGAGTTTCAAACACCCTTCTGATAAATTCTTGAATTCCATGAAGCTTATGACAAACACAAGAACAAATGAGCACGTGGACTTTATCTCATGGAGCTCCCCTTCCGATCCATCTACAGGTAACTTTTCATTTCTGCTGGATGTTCACAATATCCCTGAAGTTGTGGTTTTGAATGGTGGTAAAACTTATTGGCGATCTGGTCCATGGAACGGTCAGTCCTTTATTGGAATACCTGAAATGAATTCTGTTTATCTCTCTGGGTATAACCTTGCAATCCAAGATCAAACTTACACCCTCTCTCTTGCTTCCAATCTTGATACTCAACAAATTTTTTATTTGTTCATAAGCTCACAAGGGAACCTTGAGCAAAGTGATTGGGATCCTGAGAAGAAGCAATGGAATGTTAGTTGGGTTGCTGAAAAAACAGAGTGTGATTTCTATGGAACTTGTGGAGCGTTTGGGATTTGTAATGCAAAAGCATCCCCTGTTTGCAGTTGTTTAACAGGGTTTAAGCCAAAGCAGGAAAAGGAATGGAATCAAGGAAATTGGAGTAATGGGTGTGTGAGAAAGACGCCATTAAAATGTGAGAATCAGTTGAACAACAACACTGATGCTAAAGAAGATGGGTTTTTAAAATTGGGAATGATCAAAGTTCCATTTCTGGCAGAGTGGTCTACTTCCTCTGTTTCAATAGATGATTGCAAGCGCGAGTGCTTGTTTGAGAGCGCTGGAGCTGATCTTTACCTTCGAATCGCATTCGCAGATTTACCTACAACTACAAATAATGTAAGAGACAAGAAGGGAATTGTTATAGCCATAGCCATAGTGATACCCGCAACGATTGTCATCTTCATCATTGCCATATTCTTTCTCGGGAAATGGAAGACTAACAAACAAGAGAAGAAGATAATTATGACGTCTAGCCAAAAAGAAAGGATTTTGAAACAAACAAGGAAAGAGGATAACATGATTGAGGATGAAATCAAACTTGAGGAGCTACCACTTTATGAATTTGAGCAGCTAGCAATTGCAACAAATTACTTTGATTTGAGCAACAAGCTTGGGCAGGGTGGATTTGGTCCAGTGTATAAGGGAAAATTATTAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATAAATGAAGTGAGAGTGATTTCAAAGCTACAACACAGGAATCTTGTAAGACTTTTGGGTTGTTGCATTGAAGGAGAAGAGAAGATGTTAATTTATGAGTATATGCCCAACCTAAGTTTGGATGCATTCATCTTTGGCTCTCCCAAACAAAAAATTTTCGACTGGAGAAAAAGATTCAATATTATCGATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGGGATTCAAGATTGAAAATTATTCATAGAGATCTTAAGGTAAGTAATATTTTGTTAGACAAAGATTTGAACCCTAAAATTTCGGATTTTGGCATGGCAAGAATCTTTGGTGGCGATGAAGTTGAAGCAAACACTTTAAGAGTTGTTGGAACTTATGGATATATGTCTCCTGAATATGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTTTAGTTTTGGAGTTTTGTTACTTGAAATTATTAGTGGGAGAAGAAATACAGGATTCTACCTCCATGAAAATTGCATAAGCTTACTGGGATTTGCATGGAAATTGTGGACGGAAGACAATCTTATTCCTTTGATTGAACCAACAATATATGAACCGTGCTACAAATCAAATATTTTGAGATGCATTCACGTGGGACTCTTATGTGTTCAAGAATTTATTAATGAGAGACCAAATATTTCCACCATCATTTCAATGCTTAATAGTGAAATTGTCGATCTTCCTTCTCCAAAGCAACCTGGCTTTGTGGGCAGACCACATGAAAGTAACACAGAATCTTCTCAACAATCTTCTCAACAAAATTTAGATCAATATTCTATAAATAATGTTACACTTACAACAGTTATAGCACGCTAA | 2493 | 37.18 | MRKLRHAISLLLLLSLTCFSSRFCYGDDTITSTNFIKDPATIVSNGSVFKLGFFTPLNSTHRYVGIWFDKISPQTIAWVANRDSPLNDTSGIFTISKDGNLVVLDSNNTILWSSNVSSSSSSSSSSSSSSSSSATNNTIAQILDSGNLVLKDTTSGVIIWESFKHPSDKFLNSMKLMTNTRTNEHVDFISWSSPSDPSTGNFSFLLDVHNIPEVVVLNGGKTYWRSGPWNGQSFIGIPEMNSVYLSGYNLAIQDQTYTLSLASNLDTQQIFYLFISSQGNLEQSDWDPEKKQWNVSWVAEKTECDFYGTCGAFGICNAKASPVCSCLTGFKPKQEKEWNQGNWSNGCVRKTPLKCENQLNNNTDAKEDGFLKLGMIKVPFLAEWSTSSVSIDDCKRECLFESAGADLYLRIAFADLPTTTNNVRDKKGIVIAIAIVIPATIVIFIIAIFFLGKWKTNKQEKKIIMTSSQKERILKQTRKEDNMIEDEIKLEELPLYEFEQLAIATNYFDLSNKLGQGGFGPVYKGKLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFGSPKQKIFDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKVSNILLDKDLNPKISDFGMARIFGGDEVEANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYLHENCISLLGFAWKLWTEDNLIPLIEPTIYEPCYKSNILRCIHVGLLCVQEFINERPNISTIISMLNSEIVDLPSPKQPGFVGRPHESNTESSQQSSQQNLDQYSINNVTLTTVIAR | 830 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 7052421 | 7055630 | + | CrPI670011_03g008300.1 | Cre03g0830 | 492860 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre03g0830 | 830 | Gene3D | - | 24 | 164 | IPR036426 | - | |
| Cre03g0830 | 830 | SMART | blect_4 | 33 | 166 | IPR001480 | - | |
| Cre03g0830 | 830 | Pfam | Protein tyrosine and serine/threonine kinase | 510 | 778 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre03g0830 | 830 | Pfam | D-mannose binding lectin | 75 | 191 | IPR001480 | - | |
| Cre03g0830 | 830 | Pfam | Domain of unknown function (DUF3403) | 781 | 830 | IPR021820 | GO:0004674(InterPro) | |
| Cre03g0830 | 830 | FunFam | receptor-like serine/threonine-protein kinase SD1-8 | 479 | 583 | - | - | |
| Cre03g0830 | 830 | PIRSF | SRK | 400 | 830 | IPR024171 | GO:0004674(InterPro) | |
| Cre03g0830 | 830 | PIRSF | SRK | 1 | 403 | IPR024171 | GO:0004674(InterPro) | |
| Cre03g0830 | 830 | CDD | STKc_IRAK | 514 | 780 | - | - | |
| Cre03g0830 | 830 | SUPERFAMILY | Protein kinase-like (PK-like) | 489 | 779 | IPR011009 | - | |
| Cre03g0830 | 830 | MobiDBLite | consensus disorder prediction | 115 | 134 | - | - | |
| Cre03g0830 | 830 | MobiDBLite | consensus disorder prediction | 798 | 813 | - | - | |
| Cre03g0830 | 830 | Gene3D | Transferase(Phosphotransferase) domain 1 | 584 | 786 | - | - | |
| Cre03g0830 | 830 | Gene3D | Phosphorylase Kinase; domain 1 | 465 | 583 | - | - | |
| Cre03g0830 | 830 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 23 | 163 | - | - | |
| Cre03g0830 | 830 | MobiDBLite | consensus disorder prediction | 794 | 813 | - | - | |
| Cre03g0830 | 830 | CDD | B_lectin | 33 | 166 | IPR001480 | - | |
| Cre03g0830 | 830 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 75 | 231 | IPR036426 | - | |
| Cre03g0830 | 830 | ProSiteProfiles | Protein kinase domain profile. | 508 | 766 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cre03g0830 | 830 | ProSiteProfiles | Bulb-type lectin domain profile. | 27 | 163 | IPR001480 | - | |
| Cre03g0830 | 830 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 15 | 793 | - | - | |
| Cre03g0830 | 830 | SMART | serkin_6 | 508 | 766 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cre03g0830 | 830 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 584 | 787 | - | - | |
| Cre03g0830 | 830 | Pfam | S-locus glycoprotein domain | 224 | 333 | IPR000858 | GO:0048544(InterPro) | |
| Cre03g0830 | 830 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 629 | 641 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g1444 | Cre-Chr1:27693108 | Cre03g0830 | Cre-Chr3:7052421 | 1.20E-96 | dispersed | |
| Cre03g0828 | Cre-Chr3:7036207 | Cre03g0830 | Cre-Chr3:7052421 | 0.00E+00 | dispersed | |
| Cre03g0830 | Cre-Chr3:7052421 | Cre04g1858 | Cre-Chr4:36262618 | 5.50E-187 | dispersed | |
| Cre03g0832 | Cre-Chr3:7075439 | Cre03g0830 | Cre-Chr3:7052421 | 1.10E-24 | dispersed | |
| Cre03g0829 | Cre-Chr3:7042765 | Cre03g0830 | Cre-Chr3:7052421 | 1.50E-301 | tandem | |
| Cre03g0830 | Cre-Chr3:7052421 | Cre03g0831 | Cre-Chr3:7064430 | 1.20E-306 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 63961 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-46 | CL0016 | Cre | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre03g0830 | - | - | - | 0.0 |