Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0841 ATGCCAACGCACGCTTTCTTTAGCAGAGTTTCCAGACTCTTCCACGACCATCCTTCCCTTTCCAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATACGCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCAATGTGGATGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCAGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCGTTCACCCCATTGTTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATTCGCAACATCGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAACGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCTGTGGGAGCTCAAGTTAACACATTCAATACCCCTGGCGTTGTGGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCGGCAGAACTTCACGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTGCAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTATGGTCAACTGGTATAGGAACCCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGAGTTGAGGGATGTGACAATGTATATGCACTTGGTGACTGTGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCTGGGACACTTACAGTTAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACGACATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTGGCGAAGGAGTCTATCGAATTAGACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAGCAAGGTGCATATCTTGCCCATTGTTTTAATCGTATGGACGAGTGCGAAAAAGATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGGCGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCTTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGCACAAGAGCACTGGTGATTACGGATTGGACGAGGCGTTTTGTTTTCGGGAGAGATTCGAGCCGCATATGA 1755 43.13 MPTHAFFSRVSRLFHDHPSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKANVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHDIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMDECEKDPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7160906 7165971 - CrPI670011_03g008410.1 Cre03g0841 492871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0841 584 Gene3D - 50 413 - -
Cre03g0841 584 Gene3D - 426 583 - -
Cre03g0841 584 SUPERFAMILY FAD/NAD(P)-binding domain 217 379 IPR036188 -
Cre03g0841 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Cre03g0841 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Cre03g0841 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Cre03g0841 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 383 IPR023753 GO:0016491(InterPro)
Cre03g0841 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Cre03g0841 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Cre03g0841 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Cre03g0841 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Cre03g0841 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Cre03g0841 584 PANTHER NADH DEHYDROGENASE 54 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cre03g0841 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Cre03g0841 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Cre03g0841 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2041 Cre-Chr2:33910252 Cre03g0841 Cre-Chr3:7160906 4.80E-262 dispersed
Cre02g2257 Cre-Chr2:36171176 Cre03g0841 Cre-Chr3:7160906 9.80E-70 dispersed
Cre03g0841 Cre-Chr3:7160906 Cre05g2365 Cre-Chr5:35230795 8.00E-07 dispersed
Cre02g0470 Cre-Chr2:1909579 Cre03g0841 Cre-Chr3:7160906 1.30E-238 wgd
Cre03g0841 Cre-Chr3:7160906 Cre04g1878 Cre-Chr4:36423969 3.00E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0841 K03885 - csv:101204145 1138.25