Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre03g0898 ATGGCCGTACTCAAACTCCCATTTCTCCTCCTCTCTTTCCCCCTTCTTCTTTTCTCCTCCATTTCCGCCGTCGATTTTCTCTTCAATGGCTTCAATTCCACCGCCGTCTCCCTCTACGGCAACGCCACCATCGAATCCCGTTTCATCGCTCTCACCAACCAAACCAATTTCTCCATCGGCCGCGCTCTGTACCCTTCCAAAATCCCCACTAAGCCTCCTAATTCCTCTTCCCCCTACCCTTTCTCCGCTTCTTTCATCTTCGCCATGGCCCCTTACAGAGATACCCTTCCTGGGCATGGCTTGGTTTTCATTTTCGTTCCCACCACCGGAATCGAGGGAACTGCCTCTGCTCAGAATTTGGGGTTTCTCAACTTCACGCTTAATGGGAACCCCAATAACCATGTCTTCGGAATTGAGTTTGATGTGTTTGCTAATGAGGAATTCAACGACCCCAACGATAATCATGTCGGAATCAACTTGAATTCCTTGACGTCTTTCGTCACCGGAGAAGCTGGGTTTTGGTCTGACGGTGGTGGCGCGGATTCTTTCAACAGGTTCAGGCTTAATAGCGGCGAAAATTATCAAGTCTGGGTTGACTATTCCGACTTTCAGATGAATGTTACGATGGCTCCGGTGGGGATGAAGAAGCCACGGCGGCCGTTGATTAATACCTCTCTGAATCTCTCTGGAATTTTCATGGATGAAATGTATGTGGGGTTCACAAGTTCAACAGGGCAGTTGGTTCAAGGCCATAACATTTTAGCTTGGAGTTTCAGTAACTCTAATTTTTCATTGAGTGAGAGTTTGATTACAACTGGATTGCCCTCCTTCGTCCTCCCGAAAGACCCAATTACCAAATCGAAATGGTTCATCGCCGGAGTGACTGCCGGCGGATTCCTCGTCGTTTGTTTCATCGCGATGATTTTAGGGATTTTGATCGCCGACCACCGGAGGAAAGCGAGATTGAGAGCCGAAATGGAAGACTGGGAATTGGAGTATTGGCCACACCGAATGACATATCAAGAAATCGAATCGGCAACGAAAGGTTTTGCAGAAGAAAATGTGATCGGAATCGGAGGAAATGGGAAAGTTCATAAAGGGATTTTGGCCGGGGGAGGTTCTGAAGTTGCAGTGAAACGAATTTCTCACGATAACGATGGGATGCGTGAATTCTTAGCTGAAATCTCAAGCATAGGAAGATTAAAGCACAGAAATCTAGTAAGTTTGAGGGGTTGGTGTAAAAAAGAGAAGGGAAATTTCTTGCTTGTTTACGATTACATGGAAAATGGAAGCTTAGATAAATGGGTTTTTGATTGCGAGGAAAGAAACATGTTGAGTTGCGAGGATCGAATCCGAGTATTGAAAAACGTAGCCTCAGGGGTTTTGTATTTACACGAAGGATGGGAATCAAAGGTTCTTCATAGGGATATAAAAGCTAGCAACGTGTTGTTAGATAAGGATATGAATGGAAGGCTAGGAGATTTCGGGCTAGCTCGAGTCCATGGTCACGGTCAAGTGGCGAGCACGACTCGAGTCGTTGGCACCATGGGTTATATTGCCCCCGAGTTGATTCGAACTGGACGAGCCTCAGCTCAATCCGACGTATTTGGCTTTGGGGTTTTGATTTTGGAAGTGATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCACCGTTGGTGGATTGGGTTCGGCGGTTGGTGGTTGAAGGGGAGCTCACAGCAGCGCTCGATGAGAGGCTGAGGAAGAAGGGTGGGTGGAACGAGGAGGAAGTTGAGAGAGTGATGCATTTGGGATTGTTGTGTGCGCATCCTGACCCGAACACTCGGCCAACGATGAGGCAAATTGTGAAGGTTTTGGAAGGGAAGATTGAGTTGGATGAGAGTGAGAGTATGAATGCTTATTTGCTCCAAAGATTGAAGTCACAAGGAATTTGGTCTGACTCTGCTGTTGGTTTTGGGGATAGATTGCATCCTACATTTGAGGATTTTCTTCAGTCTTCTTCAACTTCCATATCTTGGTCTAGTTCCAATGTCCATGGCAGGTGA 2046 46.97 MAVLKLPFLLLSFPLLLFSSISAVDFLFNGFNSTAVSLYGNATIESRFIALTNQTNFSIGRALYPSKIPTKPPNSSSPYPFSASFIFAMAPYRDTLPGHGLVFIFVPTTGIEGTASAQNLGFLNFTLNGNPNNHVFGIEFDVFANEEFNDPNDNHVGINLNSLTSFVTGEAGFWSDGGGADSFNRFRLNSGENYQVWVDYSDFQMNVTMAPVGMKKPRRPLINTSLNLSGIFMDEMYVGFTSSTGQLVQGHNILAWSFSNSNFSLSESLITTGLPSFVLPKDPITKSKWFIAGVTAGGFLVVCFIAMILGILIADHRRKARLRAEMEDWELEYWPHRMTYQEIESATKGFAEENVIGIGGNGKVHKGILAGGGSEVAVKRISHDNDGMREFLAEISSIGRLKHRNLVSLRGWCKKEKGNFLLVYDYMENGSLDKWVFDCEERNMLSCEDRIRVLKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVASTTRVVGTMGYIAPELIRTGRASAQSDVFGFGVLILEVMCGRRPIEEGKPPLVDWVRRLVVEGELTAALDERLRKKGGWNEEEVERVMHLGLLCAHPDPNTRPTMRQIVKVLEGKIELDESESMNAYLLQRLKSQGIWSDSAVGFGDRLHPTFEDFLQSSSTSISWSSSNVHGR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7721827 7723872 + CrPI670011_03g008980.1 Cre03g0898 492928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre03g0898 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre03g0898 681 SMART serkin_6 350 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0898 681 CDD STKc_IRAK 356 621 - -
Cre03g0898 681 CDD lectin_legume_LecRK_Arcelin_ConA 24 256 IPR001220 GO:0030246(InterPro)
Cre03g0898 681 Gene3D Phosphorylase Kinase; domain 1 313 426 - -
Cre03g0898 681 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524(InterPro)
Cre03g0898 681 SUPERFAMILY Protein kinase-like (PK-like) 328 620 IPR011009 -
Cre03g0898 681 ProSiteProfiles Protein kinase domain profile. 350 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0898 681 Pfam Legume lectin domain 24 263 IPR001220 GO:0030246(InterPro)
Cre03g0898 681 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 312 426 - -
Cre03g0898 681 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre03g0898 681 Gene3D - 22 268 - -
Cre03g0898 681 FunFam L-type lectin-domain containing receptor kinase S.4 427 632 - -
Cre03g0898 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 266 IPR013320 -
Cre03g0898 681 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
Cre03g0898 681 PANTHER - 31 625 IPR050528 GO:0005886(PANTHER)
Cre03g0898 681 Gene3D Transferase(Phosphotransferase) domain 1 427 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0898 Cre-Chr3:7721827 Cre06g2596 Cre-Chr6:33658888 1.40E-140 dispersed
Cre03g0898 Cre-Chr3:7721827 Cre07g0641 Cre-Chr7:4204046 6.30E-213 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63964 PF00069 Pkinase 6.90E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre03g0898 - - - 0.0